Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq97621 149 1e-30 seq71986 141 2e-28 seq95232 123 6e-23 seq43048 87.8 4e-12 >seq97621 Length=3513 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || |||||||| || |||||||| ||| || || | ||||||||| Sbjct 3293 ACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTGAGTGTGCGGCCATCTTCG 3352 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||||||||||| || || || |||||||||||||||||||| || Sbjct 3353 AGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGG 3412 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || ||||||||||| || || || || || | |||| |||||| Sbjct 3413 ATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACCTCTAAAGTAATGGTCTTT 3472 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | |||||| Sbjct 3473 CCGGTCAATGTCTTCACAAATATCTGCATT 3502 >seq71986 Length=2235 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || ||||||||||| |||||||| ||||| | || |||||||| || Sbjct 511 TGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTGAGAGTACGGCCGTCTTCGAGTTGT 570 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| ||||||| || || || ||||| || || |||||||| ||||| ||| Sbjct 571 TTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGTATACCCTCTTTGTCCTGAATCTTT 630 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || ||||| ||||| || ||| ||| |||||||| || | || || || Sbjct 631 GCCTTTACATTCTCTATGGTATC---ACTCGCTTCAACTTCAAGAGTGATGGTTTTACCC 687 Query 195115 GTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| || || ||||| | ||||||| Sbjct 688 GTCAATGTCTTCACGAATATCTGCATTT 715 >seq95232 Length=1676 Score = 123 bits (136), Expect = 6e-23 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||| || |||||| | |||||| ||||||||||| || || || || || | Sbjct 194 CTTTTTGAATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATA 253 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | || ||| || || |||||||| ||||| ||||| ||| ||| || |||| Sbjct 254 TCAATCTTTGCTGATCCGGAGGAATNNNNNNNTTGTCCTGAATCTTTGCCTTCACATTCT 313 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | ||||| |||||| || || || || || | |||||||||||||| || || || | Sbjct 314 CGATGGTATCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAA 373 Query 195131 ACACTTGCATTT 195142 | | ||||||| Sbjct 374 AGATCTGCATTT 385 >seq43048 Length=5060 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 195025 TCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAA 195084 || |||||||| |||||||||||||| || || ||| |||||||||||||| || ||| Sbjct 1 TCCGGAGGAATACCTTCTTTGTCTTGTATCTTAGCCTTAACGTTCTCAATGGTATCTGAA 60 Query 195085 CTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| || | || | |||||||| ||||| || || || || | ||||||| Sbjct 61 GGCTCCACCTCTAAAGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATCTGCATTT 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107979462113657