Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq67289 132 4e-25 seq88999 111 1e-18 seq88396 107 2e-17 seq74238 104 2e-16 seq80910 95.1 1e-13 seq54261 89.7 4e-12 >seq67289 Length=3379 Score = 132 bits (146), Expect = 4e-25 Identities = 321/483 (66%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 368584 GATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGAT 368643 |||||| |||||| |||| || | ||||||||| || ||||| |||||| ||| Sbjct 1559 GATTGGGCTATTTCTAGAAACAGATATTGGGGAACACCTATTCCTCTATGGATTAGTGAC 1618 Query 368644 GATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGTGTG 368703 || || |||||| |||| || || ||||| || |||| | || || | | ||| Sbjct 1619 GACGGCGAAGAAGTTGTATGCATTGGTTCTATCGCAGAACTCGAACAAATGTGTGGC--- 1675 Query 368704 CAAAATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAAGAAA 368763 ||||| | | |||||| || | || | ||| | ||||||||||| ||| | | Sbjct 1676 CAAAAAGTAACTGATTTGCACAGAGAAGTTGTCGATAATATTAAAATTCCGTCACAAATG 1735 Query 368764 GGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCT 368823 || ||||| | ||| | |||| || ||| || || || ||||| ||| || | Sbjct 1736 GGTAAAGGAATGTTGAGTAGAGTAACAGAAGTATTCGACTGTTGGTTCGAAAGTGGAAGT 1795 Query 368824 ATGCCTTATGGTCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAAA 368883 |||||||| | ||| ||||||||| || || || |||| | |||| | || | Sbjct 1796 ATGCCTTACGCACAATCACATTATCCTTTCGAAAAYAGAAAACAATTTG---AAGACA-- 1850 Query 368884 GATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATACC 368943 ||| | || |||||| | | ||| |||||||||| | || |||||||| || Sbjct 1851 -ATTTTCCRGCAGATTTTATTGCTGAAGGTGTTGATCAAACCAGAGGATGGTTTTACACA 1909 Query 368944 CTATTAGTATTATCCACAGCTA-TTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAAC 369002 |||||||| | || || ||| | |||| ||| | | |||||||| | || || | Sbjct 1910 TTATTAGTACTTTCGAC-TCTACTCTTCGGAAAAGCTCCGTTTAAAAACTTGATTGTTAA 1968 Query 369003 TGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAAGTAAGGGTAATTATTCCGA 369062 || | || || |||||| ||||||||| ||||| || |||| | |||| Sbjct 1969 CGGACTGGTCTTAGCGAGTGATGGACAAAAGATGAGTAAAAGCAAAAAGAATTTTCCCGA 2028 Query 369063 TCC 369065 ||| Sbjct 2029 TCC 2031 >seq88999 Length=1251 Score = 111 bits (122), Expect = 1e-18 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 550315 ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACA--GCCAGT 550372 ||||| || ||| |||| ||| ||| || | | |||||||||||||| | | | Sbjct 1061 ATTTTGTCCCGAAGAAATATCAGCTAAAATTCTCAAGAAAATGAAACAAATATCGGAAAA 1002 Query 550373 GCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 | |||| || |||| || | || || ||||| || || ||||||||||||||| Sbjct 1001 TCGTTTG--GGATGTAAAGTAACAAAAGCGGTCATAACAGTTCCGGCATATTTTAATGAC 944 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 |||||| || || ||||||||||| ||| ||||| ||||| | ||||| | || Sbjct 943 TCACAAAAACAGGCCACTAAAGATGCCGGAAAAATTGCAGGACTGGAAGTTCTGAGGATC 884 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGC 550521 ||||||||||| |||||||| || |||| Sbjct 883 ATCAATGAACCAACTGCTGCATCAATTGC 855 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 361710 AAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCTATTT 361769 |||| | ||| ||||| |||||||| || || || | | ||| | ||||| || |||| Sbjct 853 AAGCAATTGATGCAGCAGTTGGTTCATTGATGATCCTCAGAACTTCCAGTCCTGCAATTT 912 Query 361770 TTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTAATCA 361829 || |||||| |||||| || ||||| |||||||||||||| ||||| || || | Sbjct 913 TTCCGGCATCTTTAGTGGCCTGTTTTTGTGAGTCATTAAAATATGCCGGAACTGTTATGA 972 Query 361830 CTGCTTTT 361837 | |||||| Sbjct 973 CCGCTTTT 980 >seq88396 Length=2800 Score = 107 bits (118), Expect = 2e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 552414 TCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAA 552473 || || |||||| |||| ||||||||| | | ||||||||| || | | |||||| Sbjct 1313 TCTGACAATCAACACACTGTCACAATTCAAGTCTATGAAGGAGAGCGACCACTAACTAAA 1254 Query 552474 GATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTA 552533 |||||| ||| | |||| ||| | | |||||||||||| || ||||| || || Sbjct 1253 GATAATCATCTTTTGGGTAAATTTGACCTGACAGGTATTCCTCCGGCACCTCGAGGTGTG 1194 Query 552534 CCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || ||||||||||| ||||| || ||||||| || || || |||| || || ||| Sbjct 1193 CCTCAAATTGAAGTGACTTTTGAAATCGATGTGAACGGTATACTGAAGGTTACCGCT 1137 Score = 87.8 bits (96), Expect = 1e-11 Identities = 192/283 (68%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 361553 TCTTCACCACCTAAATGTGTACTACCGCTAACTGCTAATG--TTCTAAATAAGCCATTAT 361610 ||||||||||||||||| || ||| || || || ||| ||| | || |||| Sbjct 1996 TCTTCACCACCTAAATGAGTGTCACCATTAG-TGGAAACCACTTC-AAACACTCCGTTAT 2053 Query 361611 TAATATTCATGAGACAAACATCGAGTGTTCCTGCACCTAAATCATATATGATAATATTCC 361670 |||| | | || | ||||||| |||||| | || ||||| ||| | |||||| Sbjct 2054 CAATAGTGAGAAGGGAGACATCGAATGTTCCGCCGCCCAAATCGAATACCAAAATATT-- 2111 Query 361671 CCCCGTTTTTATTTTTCCAAGTTTTACTTCCAAGACCATAAGCTAATGAAGCAGCTGTTG 361730 ||||| | |||| |||| | | ||||| ||||| | | ||||| || | Sbjct 2112 -----TTTTTCTCCTTCC---TTTTTGT--CGAGACCGTAAGCAATGGCTGCAGCGGTCG 2161 Query 361731 GTTCGTTAATTATTTTAATAACATTGAGTCCCGCTATTTTTGATGCATCTAAAGTGGCTT 361790 |||||||||| || |||||||||||||| || || || ||| |||||| | Sbjct 2162 GTTCGTTAATAATACGCATAACATTGAGTCCAGCGATAACACCGGCGTCTTTAGTGGCCT 2221 Query 361791 GACGTTGTGCATCATTAAAATATGCAGGAACAGTAATCACTGC 361833 | ||||| || ||||| ||||| || ||||| || | ||||| Sbjct 2222 GTCGTTGAGCGTCATTGAAATAAGCGGGAACTGTGACAACTGC 2264 >seq74238 Length=2986 Score = 104 bits (114), Expect = 2e-16 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 552104 ATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGA 552163 |||||| | ||||| || | || ||||| || || ||| ||||||| ||||||| || Sbjct 425 ATCCAATATTGATGAAGTTATTCTGGTTGGAGGCTCAACACGAATTCCAAAAATTCAAGA 366 Query 552164 AATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGC 552223 | || | ||| ||||| || || ||| | ||| || | ||||||||||||| || Sbjct 365 ACTGCTGAGTGAATATTTTAAAGGAAAACCTCTTAATAAATCTATTAATCCAGATGAAGC 306 Query 552224 TGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 |||||| |||||||| ||||| ||||| || || ||| Sbjct 305 TGTTGCTTATGGTGCAGCAATACAAGCTGCAATCCTT 269 >seq80910 Length=732 Score = 95.1 bits (104), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||| ||| | || ||| | || || |||| ||||||| Sbjct 206 GCGGTGATTACAGTTCCAGCTTATTTCAATAATTCTCAAAGACAGGCCACTAGAGATGCT 147 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| ||||| || ||| | ||| || | | | || ||||| |||||||||||| || Sbjct 146 GGAAAAATTGCCGGTCTTGAAGTTGTTAGCTTATTGAACGAACCAACTGCTGCTGCAATT 87 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GT 550576 |||||||| | ||||| | || ||||| || ||| | ||||||||| || Sbjct 86 GCATATGGTTTCAATAAA---ACCAATAAAGAAGAGAAAGTATTAGTCTTTGATTTAGGT 30 Query 550577 GGAGGTA 550583 ||||||| Sbjct 29 GGAGGTA 23 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 |||||| || | || |||||| ||||||||||| | || ||| ||| | || || || Sbjct 78 ACCATATGCAATTGCAGCAGCAGTTGGTTCGTTCAATAAGCTAACAACTTCAAGACCGGC 137 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 |||||| |||||| |||||| || | ||| | || ||| ||||| || ||||| || Sbjct 138 AATTTTTCCAGCATCTCTAGTGGCCTGTCTTTGAGAATTATTGAAATAAGCTGGAACTGT 197 Query 361825 AATCACTGCTTTTTCAACTT 361844 |||||| ||| ||| |||| Sbjct 198 AATCACCGCTCTTTTGACTT 217 >seq54261 Length=2469 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || ||||| || || || ||||| |||||||| ||| | || || |||||||||||| Sbjct 1606 GCGGTCATAACAGTTCCCGCTTATTTCAATGACTCGCAAAGACAGGCCACTAAAGATGCT 1547 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || | || ||||| || | | | ||||||||||| || |||||||| || Sbjct 1546 GGTCAGATATCAGGGCTTAACGTGTTGAGAGTGATCAATGAACCCACAGCTGCTGCCATT 1487 Query 550520 GCATATGGACTTGATAA 550536 || ||||| | ||||| Sbjct 1486 GCTTATGGTATGGATAA 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4023707640943790