Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq80910 181 7e-40 seq67289 154 1e-31 seq88999 116 2e-20 seq88396 107 1e-17 seq74238 89.7 3e-12 seq54261 89.7 3e-12 >seq80910 Length=732 Score = 181 bits (200), Expect = 7e-40 Identities = 405/596 (68%), Gaps = 14/596 (2%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| || ||||||||||| || ||| ||| || ||||| | ||||||| |||| Sbjct 611 ATTGGCATAGATTTAGGAACCACATACTCTTGCGTTGCTGTCGTGAAAAATGGAGAAGTC 552 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 | | || | |||| || |||||||| ||||| ||||| || ||| ||| Sbjct 551 AAGGTCATAGAAAATGGATTGGGAAATAGAACGACACCCAGTTATGTATCATTTGTTGAG 492 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 | || | ||| | |||||| | |||||| ||| |||| || ||||||| || || Sbjct 491 AAGGACAAACTTGTAGGAGATCCAGCTAAAGATCTGGCTGGATTGAATCCTGAAAACACG 432 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 ||||||| || || | |||||||| | | |||| | | ||| |||| Sbjct 431 TTTTTTGACTTCAAGAGGCTAATTGGTCGCCGCTATTCCGATAAACATATACAAAATGAT 372 Query 474572 A-TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATA-TAGAAGCAA 474629 | | || || ||||||| | || | ||||| | || ||| || | || || || | Sbjct 371 ACTAAGTTAT-GGCCTTTCATTGTATTGAATGTGGCTGATAAGCC-TCTACTACGAGTAG 314 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | | | ||| | |||||| || || ||| || | || | |||||||| | | Sbjct 313 AAATTGATGATGACATTAAACAGTTGCACCCTGAAGAACTCTCAGCCATGGTTTTGGACC 254 Query 474690 AAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGT-AACTGATGCAGTAATTACT 474748 | ||||| || | || ||||||||||| | |||| || || || || ||||| Sbjct 253 ATTTGAAAGAAGCGGCTGAAGCATATCTTGGAGAGAAAGTCAAAAGA-GCGGTGATTACA 195 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 |||||||| ||||| ||| |||||||| | || || |||| |||||| |||| |||||| Sbjct 194 GTTCCAGCTTATTTCAATAATTCTCAAAGACAGGCCACTAGAGATGCTGGAAAAATTGCC 135 Query 474809 GGTCTTAATGTTTTACGTATTATT-AATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 |||||| | ||| | | ||||| || |||||||| || || ||| |||| |||||| | Sbjct 134 GGTCTTGAAGTTGTTAG-CTTATTGAACGAACCAACTGCTGCTGCAATTGCATATGGTTT 76 Query 474868 TGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT---GTGGAGGTA 474920 |||| | | | ||||||| || || ||| ||||||||| ||||||||| Sbjct 75 CAATAAAA---CCAATAAAGAAGAGAAAGTATTAGTCTTTGATTTAGGTGGAGGTA 23 >seq67289 Length=3379 Score = 154 bits (170), Expect = 1e-31 Identities = 360/534 (67%), Gaps = 21/534 (4%) Strand=Plus/Plus Query 297112 GATTGGTGTATTTCAAGAAGTAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGAT 297171 |||||| |||||| |||| ||||||||||||||||| ||||| | |||| ||| Sbjct 1559 GATTGGGCTATTTCTAGAAACAGATATTGGGGAACACCTATTCCTCTATGGATTAGTGAC 1618 Query 297172 GATGGTGAAGAAATAATTTGTATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAATT 297231 || || |||||| | | || |||||||| | | |||| | || || | | || Sbjct 1619 GACGGCGAAGAAGTTGTATGCATTGGTTCTATCGCAGAACTCGAACAAATGTGTGGCC-- 1676 Query 297232 GATAATATTAATGATTTACATATTGATAAAATTGATCAAATAAAAATTCCTTCTCGTAAA 297291 | || | | |||||| || | || | ||| | || |||||||| || | | Sbjct 1677 -AAAAAGTAACTGATTTGCACAGAGAAGTTGTCGATAATATTAAAATTCCGTCACAAATG 1735 Query 297292 GGAAAAGGCATGTTATCTCGTGTTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTCT 297351 || ||||| ||||| | | || || | || || || |||||||| ||| || | Sbjct 1736 GGTAAAGGAATGTTGAGTAGAGTAACAGAAGTATTCGACTGTTGGTTCGAAAGTGGAAGT 1795 Query 297352 ATGCCTTATGGTCAAATTCATTATCCTTTTGAAAATTCCGAAATTTTAGACACTTCACAA 297411 |||||||| | ||| ||||||||||| ||||| |||| ||| || || Sbjct 1796 ATGCCTTACGCACAATCACATTATCCTTTCGAAAAYA--GAAA------ACAATTTG-AA 1846 Query 297412 GATTATATT---GCAGATTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTAT 297468 || || || ||||||||||| | ||| |||||||||| ||||| |||||||| Sbjct 1847 GACAATTTTCCRGCAGATTTTATTGCTGAAGGTGTTGATCAAACCAGAGGATGGTTTTAC 1906 Query 297469 ACTTTATTAGTTCTTTCTACAGCTA-TATTTAACAAACCAGCATTTAAAAATGTAATTGT 297527 || |||||||| ||||| || ||| | || ||| | | |||||||| | ||||| Sbjct 1907 ACATTATTAGTACTTTCGAC-TCTACTCTTCGGAAAAGCTCCGTTTAAAAACTTGATTGT 1965 Query 297528 TACAGGAAT--TGTTAACGCAGCTGATGGACAAAAAATGTCAAAAAGTAAAGGTAATTAT 297585 || ||| | | ||| || || |||||||||||| ||| ||||| ||| |||| | Sbjct 1966 TAACGGACTGGTCTTAGCG-AG-TGATGGACAAAAGATGAGTAAAAGCAAAAAGAATTTT 2023 Query 297586 CCTGATCCAAATATTTTGATGGATAAATATGGTGCAGATACTTTACGTCTTTAT 297639 || ||||| | || | |||| || || ||||| || | ||||||||| Sbjct 2024 CCCGATCCGATGGAAGTGGTTAATAAGTACGGCGCAGACGCTCTCCGTCTTTAT 2077 >seq88999 Length=1251 Score = 116 bits (128), Expect = 2e-20 Identities = 270/401 (67%), Gaps = 7/401 (2%) Strand=Plus/Minus Query 474465 TTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTA 474524 ||||||||| |||||| | ||||| | | |||| ||||||| ||||| || | Sbjct 1251 TTGGAGATGTGGCTAAAGAGGAAGCTATTTATGATCCACGTAATACTCTTTTTCTCGCAA 1192 Query 474525 AAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGC 474584 ||||| | ||||||||| | || ||||||| | || ||| ||||||| | ||| Sbjct 1191 AAAGACTTATTGGTCGTCAATTCAATGATACATCAGTTCAAAATGATATGAAACTGTGGT 1132 Query 474585 CTTTTAAGGTGATAAATGTTGGTGGTAA--ACCATATAT--AGAAGCAATACACGCAGGT 474640 ||| ||| || | ||| || ||| | | || || ||| ||| | | |||| Sbjct 1131 CTTATAAAGTTGTTGATGACGGCAATAACAATCCTAAATTCAGAGTCAA-ATATAAAGGT 1073 Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 || || ||||| || ||| |||| || | | || | |||||||||||| Sbjct 1072 AAAGATATGACATTTTGTCCCGAAGAAATATCAGCTAAAATTCTCAAGAAAATGAAACAA 1013 Query 474701 ACCGCGAGCTCATATCTTGG-ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 | || | || |||| | ||||||| | || || || || ||||| ||||| Sbjct 1012 ATATCG-GAAAATCGTTTGGGATGTAAAGTAACAAAAGCGGTCATAACAGTTCCGGCATA 954 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 ||||||||| || ||| || || ||||||||||| |||| ||||||||| || | || Sbjct 953 TTTTAATGACTCACAAAAACAGGCCACTAAAGATGCCGGAAAAATTGCAGGACTGGAAGT 894 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 | | | || || ||||||||||| || || || |||||| Sbjct 893 TCTGAGGATCATCAATGAACCAACTGCTGCATCAATTGCTT 853 Score = 104 bits (114), Expect = 2e-16 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 290839 TGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGA 290898 ||| || || ||||||||||| || || || | || || || |||||||||||| | | Sbjct 860 TGATGCAGCAGTTGGTTCATTGATGATCCTCAGAACTTCCAGTCCTGCAATTTTTCCGGC 919 Query 290899 ATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCttt 290958 |||| ||| ||||| ||| | ||||||||||| || || ||||| || || ||||| Sbjct 920 ATCTTTAGTGGCCTGTTTTTGTGAGTCATTAAAATATGCCGGAACTGTTATGACCGCTTT 979 Query 290959 ttccactttctttttcaaataattttctgccatttgttttatttcTATAAGTATTTGTGC 291018 | ||||| | |||| |||||| | |||||||| |||| | || |||| || Sbjct 980 TGTTACTTTACATCCCAAACGATTTTCCGATATTTGTTTCATTTTCTTGAGAATTTTAGC 1039 Query 291019 GCAAATTTCTTCAGG 291033 | |||||||| || Sbjct 1040 TGATATTTCTTCGGG 1054 >seq88396 Length=2800 Score = 107 bits (118), Expect = 1e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAA 476056 ||||| |||||| ||||| || || ||| ||| |||||| || || | | |||||| Sbjct 1313 TCTGACAATCAACACACTGTCACAATTCAAGTCTATGAAGGAGAGCGACCACTAACTAAA 1254 Query 476057 GATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTT 476116 |||||| | | || | ||| | || |||||||||||| || || |||| || Sbjct 1253 GATAATCATCTTTTGGGTAAATTTGACCTGACAGGTATTCCTCCGGCACCTCGAGGTGTG 1194 Query 476117 CCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||||||||||||| |||||||| || |||| || ||||| || || ||||| ||| Sbjct 1193 CCTCAAATTGAAGTGACTTTTGAAATCGATGTGAACGGTATACTGAAGGTTACCGCT 1137 Score = 104 bits (114), Expect = 2e-16 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTG 474734 |||||||||| ||||||||| |||| || | ||| | || || | || | Sbjct 2326 CAATGGTTTTGATTAAAATGAAAGAAACAGCTGAAGCCTATTTGGGTAAAAAGGTGTCGC 2267 Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 | ||||| | || ||||| || ||||| ||||| ||||||| || || |||||||| | Sbjct 2266 ACGCAGTTGTCACAGTTCCCGCTTATTTCAATGACGCTCAACGACAGGCCACTAAAGACG 2207 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || || || || || |||||| | ||||||||||| ||||| || || || || Sbjct 2206 CCGGTGTTATCGCTGGACTCAATGTTATGCGTATTATTAACGAACCGACCGCTGCAGCCA 2147 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||| ||||| || || || Sbjct 2146 TTGCTTACGGTCTCGACAAAAA 2125 >seq74238 Length=2986 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 475698 ATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCAT 475757 ||||| || |||| || ||||| |||||| ||||||||||||| |||| |||| Sbjct 414 ATGAAGTTATTCTGGTTGGAGGCTCAACACGAATTCCAAAAATTCAAGAACTGCTGAGTG 355 Query 475758 CATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATG 475817 ||||||||| || ||| | ||| || | | ||||| |||||||||||||| |||| Sbjct 354 AATATTTTAAAGGAAAACCTCTTAATAAATCTATTAATCCAGATGAAGCTGTTGCTTATG 295 Query 475818 GAGCTGCTGTCCAAGCAGCTAT 475839 | || || | ||||| || || Sbjct 294 GTGCAGCAATACAAGCTGCAAT 273 >seq54261 Length=2469 Score = 89.7 bits (98), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || || || ||||| || ||||| ||||| || ||| | || || ||||||||||| Sbjct 1606 GCGGTCATAACAGTTCCCGCTTATTTCAATGACTCGCAAAGACAGGCCACTAAAGATGCT 1547 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || || |||| ||||| || || | | || |||||||| ||||| || || || Sbjct 1546 GGTCAGATATCAGGGCTTAACGTGTTGAGAGTGATCAATGAACCCACAGCTGCTGCCATT 1487 Query 474857 GCTTATGGTCTTGATAAGA 474875 ||||||||| | ||||||| Sbjct 1486 GCTTATGGTATGGATAAGA 1468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3263646458094308