Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq88396 196 6e-45 seq71986 141 1e-28 seq97621 140 4e-28 seq95232 116 5e-21 seq80910 116 5e-21 seq54261 93.3 6e-14 seq47905 87.8 2e-12 seq43048 87.8 2e-12 seq102572 86.0 8e-12 >seq88396 Length=2800 Score = 196 bits (216), Expect = 6e-45 Identities = 267/372 (72%), Gaps = 3/372 (1%) Strand=Plus/Minus Query 195617 AAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACT 195676 |||||| || ||||| ||||| || | ||||| |||||||| ||||| || || Sbjct 2357 AAGAAAATCTTCGCTCCAGAAGAGATCAGTGCAATGGTTTTGATTAAAATGAAAGAAACA 2298 Query 195677 GCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTC 195736 || ||| | | ||||||||| ||| | |||||||| || || || ||||| ||| Sbjct 2297 GCTGAAGCCTATTTGGGTAAAAAGGTGTCGCACGCAGTTGTCACAGTTCCCGCTTATTTC 2238 Query 195737 AGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTT 195796 | ||| | ||||||||||| || || ||||| | || ||| || || || || | | Sbjct 2237 AATGACGCTCAACGACAGGCCACTAAAGACGCCGGTGTTATCGCTGGACTCAATGTTATG 2178 Query 195797 AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGAC 195856 | ||||| || ||||| || || || || |||||||| ||||| ||| || ||||| Sbjct 2177 CGTATTATTAACGAACCGACCGCTGCAGCCATTGCTTACGGTCTCGAC---AAAAAGGAA 2121 Query 195857 GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTC 195916 | ||| |||||| | ||| | || ||| | || || || || || |||||||| |||||| Sbjct 2120 GGAGAAAAAAATATTTTGGTATTCGATTTGGGCGGCGGAACATTCGATGTCTCCCTTCTC 2061 Query 195917 AATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGT 195976 | |||||| || | || ||||| | ||| |||||| |||||| |||||||| Sbjct 2060 ACTATTGATAACGGAGTGTTTGAAGTGGTTTCCACTAATGGTGACACTCATTTAGGTGGT 2001 Query 195977 GAAGATTTCGAT 195988 ||||| |||||| Sbjct 2000 GAAGACTTCGAT 1989 Score = 109 bits (120), Expect = 7e-19 Identities = 162/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 || |||||| || ||||| || || ||||| || ||||| ||||| | | |||| | Sbjct 2759 AGTTATTGGGATTGATTTGGGGACCACTTATTCSTGTGTCGGTGTCTTCAAGAATGGAAG 2700 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 |||||||| || | ||||| ||||||||||| | || || || ||||| || || || Sbjct 2699 GGTAGAGATAATAGCCAATGATCAAGGAAACCGAATCACACCCTCTTACGTGGCATTCAC 2640 Query 195418 AGATAA---TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTAT 195474 | | | ||||| || | || || ||||| || |||||| || || || Sbjct 2639 TGCTGAGGGGGAACGACTTATCGGTGACGCCGCTAAGAATCAGTTGACTTCCAATCCGGA 2580 Query 195475 CAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGAT 195523 |||||||| |||||||||||||| || || |||||| ||| ||||| Sbjct 2579 AAATACTGTTTTTGACGCGAAGCGACTGATCGGTCGCGAGTGGACGGAT 2531 >seq71986 Length=2235 Score = 141 bits (156), Expect = 1e-28 Identities = 179/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || | || || ||||| ||||| || || ||||| || Sbjct 713 ATGCAGATATTCGTGAAGACATTGACGGGTAAAACCATCACTCTTGAAGTTGAAGCGAGT 654 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || |||||||| || || || || || || ||||||||| Sbjct 653 GATACCATAGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATACCTCCCGATCAG 594 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||||| || || |||||||| || ||||| || ||||| ||| |||||||||| Sbjct 593 CAGAGACTTATATTCGCGGGTAAACAACTCGAAGACGGCCGTACTCTCAGTGATTACAAC 534 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC--AACCGACG 172099 ||||||| || || ||||| || | ||||| |||| | || || || || || | Sbjct 533 ATTCAAAAAGAATCAACTCTTCATTTGGTTCTTCGGCTGAGAGGAGGCGCTAAAAAGAGG 474 Query 172100 AAGAA 172104 ||||| Sbjct 473 AAGAA 469 >seq97621 Length=3513 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | || ||||| || || || | ||||||||| |||| Sbjct 3501 ATGCAGATATTTGTGAAGACATTGACCGGAAAGACCATTACTTTAGAGGTTGAGCCGTCC 3442 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||||| || || || || || ||||||||||| || |||||| Sbjct 3441 GATACCATTGAGAATGTGAAAGCAAAAATCCAGGACAAAGAAGGCATTCCTCCGGATCAG 3382 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||||| || ||||| |||||||| |||||||| || || ||| || ||||| Sbjct 3381 CAGAGACTTATCTTCGCTGGAAAACAGCTCGAAGATGGCCGCACACTCAGCGACTACAAT 3322 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || || ||||| || || || || || || | | || ||||| || Sbjct 3321 ATCCAGAAAGAGTCAACCCTCCATCTGGTCCTTCGTTTACGCGGTGGCGC 3272 >seq95232 Length=1676 Score = 116 bits (128), Expect = 5e-21 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || | || ||||| || ||||| || ||||| ||| | || Sbjct 383 ATGCAGATCTTTGTGAAGACATTGACAGGAAAGACCATCACTCTAGAGGTCGAGCCTTCG 324 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || |||||||| || || ||||| || |||||| Sbjct 323 GATACCATCGAGAATGTGAAGGCAAAGATTCAGGACAANNNNNNNATTCCTCCGGATCAG 264 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||| || | || ||||| || ||||| || ||||||||| | || | ||||| ||| Sbjct 263 CAAAGATTGATATTTGCCGGAAAACAACTCGAAGATGGAAGAACTTTAAGCGATTATAAC 204 Query 172042 GTTCAAAA 172049 ||||||| Sbjct 203 ATTCAAAA 196 >seq80910 Length=732 Score = 116 bits (128), Expect = 5e-21 Identities = 401/617 (65%), Gaps = 10/617 (2%) Strand=Plus/Minus Query 195301 TATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGT 195360 |||||| || ||||||||||| || ||||| || |||| ||| | |||||| || Sbjct 612 TATTGGCATAGATTTAGGAACCACATACTCTTGCGTTGCTGTCGTGAAAAATGGAGAAGT 553 Query 195361 AGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGA 195420 || | || |||| ||||| | || || || || || | ||| || Sbjct 552 CAAGGTCATAGAAAATGGATTGGGAAATAGAACGACACCCAGTTATGTATCATTTGTTGA 493 Query 195421 TAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATAC 195480 || || || || |||||| | || ||| ||| | | | |||| ||| || || Sbjct 492 GAAGGACAAACTTGTAGGAGATCCAGCTAAAGATCTGGCTGGATTGAATCCTGAAAACAC 433 Query 195481 TGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGA 195540 | |||||| ||| | || ||||||||| | ||| ||||| | | ||| | || Sbjct 432 GTTTTTTGACTTCAAGAGGCTAATTGGTCGCCGCTATTCCGATAAACATATACAAAATGA 373 Query 195541 TATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGT 195600 || ||| ||| ||| | | |||| |||||||||||||||| | | || Sbjct 372 TACTAAGTTATGGCCTT-TCA--TTGTATTGAATGTGGCTGATAAGCCTCTACTACGAGT 316 Query 195601 TGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTTGA 195659 ||| || | | ||| | ||||| || || ||| |||||| | || | ||||| ||| Sbjct 315 AGAAATTGATGATGACATTAAACAGTT-GCACCCTGAAGAACTCTCAGCCATGGTTTTGG 257 Query 195660 TTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | |||| || | || ||| | | || ||| | || ||||| || || | Sbjct 256 ACCATTTGAAAGAAGCGGCTGAAGCATATCTTGGAGAGAAAGTCAAAAGA-GCGGTGATT 198 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || ||||| |||| | |||| ||| ||||||| || | || |||| ||| Sbjct 197 ACAGTTCCAGCTTATTTCAATAATTCTCAAAGACAGGCCACTAGAGATGCTGGAAAAATT 138 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| | | |||| | | || |||||||| || ||||||||||| |||||| Sbjct 137 GCCGGTCTTGAAGTTGTTAGCTTATTGAACGAACCAACTGCTGCTGCAATTGCATATGGT 78 Query 195839 CTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 | | || | ||| | ||||| ||| ||||| |||||||| | ||||| ||||| Sbjct 77 TTCAATAAAACCAATAAAGAAGAGAAA---GTATTAGTCTTTGATTTAGGTGGAGGTACT 21 Query 195899 TTTGATGTCTCACTTCT 195915 || || || || |||| Sbjct 20 TTAGACGTTTCTGTTCT 4 >seq54261 Length=2469 Score = 93.3 bits (102), Expect = 6e-14 Identities = 179/260 (69%), Gaps = 12/260 (5%) Strand=Plus/Minus Query 195653 GTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCA 195712 || |||| ||| ||||| ||||| || || | | | || | ||||| | || Sbjct 1663 GTCTTGACTAAAATGAAAGAGACGGCTGAGGCATATCTAAACCAACCCGTGAAGAACGCG 1604 Query 195713 GTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCT 195772 || | || || || ||||| |||| ||| || ||| ||||||| || || || |||| | Sbjct 1603 GTCATAACAGTTCCCGCTTATTTCAATGACTCGCAAAGACAGGCCACTAAAGATGCTGGT 1544 Query 195773 GCTATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGC 195831 || | || || ||| || || ||| | ||||||||||| ||||| ||||| ||||| Sbjct 1543 CAGATATCAGGGCTTAAC-GTGTTGAGAGTGATCAATGAACCCACAGCTGCTGCCATTGC 1485 Query 195832 TTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTG--ATCTTTGATCTCGGT 195889 ||||||| |||| |||| |||||| | | ||||| ||| |||| | ||| Sbjct 1484 TTATGGTATGGATAAGA------CTGAAGAT--AGAGTTATTGCTGTCTATGATTTAGGT 1433 Query 195890 GGTGGTACGTTTGATGTCTC 195909 || || || ||||| || || Sbjct 1432 GGCGGAACATTTGACGTTTC 1413 >seq47905 Length=581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || || | || ||||| |||||||| | ||||| ||| | || Sbjct 475 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACTATCACTTTAGAGGTCGAGCCCTCR 534 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCAT 171968 ||||| ||||| ||| | ||||| |||||||| || || ||||| || Sbjct 535 GACACTATCGAGAACGTGAAAGCAAAGATTCAGGACAAAGAAGGTAT 581 >seq43048 Length=5060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || | |||||||| || ||||| | ||||| ||| | ||| Sbjct 116 ATGCAGATCTTTGTGAAGACATTGACTGGAAAGACCATCACTTTAGAGGTGGAGCCTTCA 57 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGA 171977 || || || || ||| | || || ||||| ||||| || ||||| ||||| || || Sbjct 56 GATACCATTGAGAACGTTAAGGCTAAGATACAAGACAAAGAAGGTATTCCTCCGGA 1 >seq102572 Length=1560 Score = 86.0 bits (94), Expect = 8e-12 Identities = 90/122 (74%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 171967 ATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACC 172026 ||||| || ||||||||| || | |||||||| || ||||| || ||||| || || || Sbjct 1560 ATTCCTCCGGATCAGCAAAGATTGATTTTTGCGGGCAAACAACTGGAAGACGGCCGCACT 1501 Query 172027 CTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGT 172086 || |||||||| | ||||| ||||| || || || | ||||| | ||||| || Sbjct 1500 CTTWSYGATTACAAYATWCAAAAAGAGTCAACWCTTCATTTGGTTCTCCGTCTTCGCGGA 1441 Query 172087 GG 172088 || Sbjct 1440 GG 1439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656993437779120