Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq97621 104 3e-17 seq95232 102 1e-16 seq43048 86.0 9e-12 >seq97621 Length=3513 Score = 104 bits (114), Expect = 3e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 aatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | || |||||||| ||||| || ||||| ||||| || || || Sbjct 3502 AATGCAGATATTTGTGAAGACATTGACCGGAAAGACCATTACTTTAGAGGTTGAGCCGTC 3443 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || |||||| ||||| || || ||||||||||| ||||| || || Sbjct 3442 CGATACCATTGAGAATGTGAAAGCAAAAATCCAGGACAAAGAAGGCATTCCTCCGGATCA 3383 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| | || | || || || |||||||||||| Sbjct 3382 GCAGAGACTTATCTTCGCTGGAAAACAGCTCGAAGAT 3346 >seq95232 Length=1676 Score = 102 bits (112), Expect = 1e-16 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 155778 AACaataaagtatttattgtttataataaaaatttatgtaataaaatgcaaatatttatt 155837 |||||||| ||||| | ||| | || |||| | || ||||||||| || ||| | Sbjct 426 AACAATAAGTCATTTAAT-TTTGTTATTGAAATAAAGGTC-TAAAATGCAGATCTTTGTG 369 Query 155838 aaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 || |||||||| ||||| || || || |||| ||||| ||| |||| || || Sbjct 368 AAGACATTGACAGGAAAGACCATCACTCTAGAGGTCGAGCCTTCGGATACCATCGAGAAT 309 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 ||||| || || || || || || ||||| || || ||||||||||| | | Sbjct 308 GTGAAGGCAAAGATTCAGGACAANNNNNNNATTCCTCCGGATCAGCAAAGATTGATATTT 249 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 ||||| || || ||||||||| ||||||||| |||||||| || Sbjct 248 GCCGGAAAACAACTCGAAGATGGAAGAACTTTAAGCGATTATAACAT 202 >seq43048 Length=5060 Score = 86.0 bits (94), Expect = 9e-12 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 155807 aaatttatgtaataaaatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATT 155866 |||||| | || |||||||| || ||| | || |||||||||||||| || || || || Sbjct 131 AAATTTCAG-AACAAAATGCAGATCTTTGTGAAGACATTGACTGGAAAGACCATCACTTT 73 Query 155867 AGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 ||| || || ||| |||| ||| ||||| || ||| |||||||| |||||||| Sbjct 72 AGAGGTGGAGCCTTCAGATACCATTGAGAACGTTAAGGCTAAGATACAAGACAAAGAAGG 13 Query 155927 CATACCTCCAGA 155938 || ||||| || Sbjct 12 TATTCCTCCGGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730905279423600