Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq53154 150 4e-31 seq71986 118 2e-21 seq97621 114 3e-20 seq95232 89.7 1e-12 seq64116 84.2 4e-11 >seq53154 Length=623 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 61838 AAGAATAAAATGTTTTTTCTAATTTTAGATAATATCTTCTGACTTCTTTGCATTTGGAAT 61897 ||||||| ||| ||||||||| || || |||||||||||| |||||||| ||| || Sbjct 147 AAGAATAGAATATTTTTTCTAGTTGTATATAATATCTTCTAACTTCTTTAGCTTTATGAT 206 Query 61898 TATTTAACATCATTATCGCTTCTTTAAAATTATCAACAGGCATTAATATCCATCTTTTAG 61957 |||| |||||||||| ||||| |||||| ||||| | | ||| ||||| | ||||| Sbjct 207 TATTCAACATCATTACTGCTTCCTTAAAACTATCAGTTGTTAATAAAATCCAACGTTTAG 266 Query 61958 AATgtatagtatgcgtattagattcttttatatcattttgtatatattcatataatttta 62017 |||| || || || | ||| |||||| | |||||||| ||||||||| ||| Sbjct 267 AATGAATTGTTCTTAAATCACATT-TTTTAT----TCTTGTATATGTTCATATAAATTTG 321 Query 62018 ttttatcatttttataATCTATGTGTTC 62045 ||| |||||||||||||| || ||||| Sbjct 322 CTTTTTCATTTTTATAATCAATTTGTTC 349 Score = 122 bits (134), Expect = 2e-22 Identities = 144/191 (75%), Gaps = 7/191 (4%) Strand=Plus/Plus Query 10390 AAGAATAAAATATTTTTTCTAATTTAATGTAATATTTTCTTACTTCTTTAGATTTGGAAT 10449 ||||||| ||||||||||||| || || |||||| |||| |||||||||| ||| || Sbjct 147 AAGAATAGAATATTTTTTCTAGTTGTATATAATATCTTCTAACTTCTTTAGCTTTATGAT 206 Query 10450 TATTCAACATCATTA-TGCTTTCTTTAAAATTATCTATTGACATTATTATCCATCTTTTC 10508 ||||||||||||||| ||| ||| |||||| |||| ||| | || ||||| | ||| Sbjct 207 TATTCAACATCATTACTGC-TTCCTTAAAACTATCAGTTGTTAATAAAATCCAACGTTTA 265 Query 10509 GAATGAATAGTACGGTTGTCACCatttttaatttcattttgaatatattcataattattt 10568 |||||||| || | ||| ||||||| || | ||| |||| |||||| |||| Sbjct 266 GAATGAATTGTTCTTAAATCA-CATTTTTTAT----TCTTGTATATGTTCATATAAATTT 320 Query 10569 attttttCGTT 10579 |||||| || Sbjct 321 GCTTTTTCATT 331 Score = 113 bits (124), Expect = 9e-20 Identities = 105/131 (80%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 297173 ACTATTCATTCGAAAAGATGGATAATAATGTCAATAGATAATTTTAAAGAAAGCA-TAAT 297231 || |||||||| ||| | ||||| || | ||| |||| |||||| ||| ||| |||| Sbjct 276 ACAATTCATTCTAAACGTTGGATTTTATTAACAACTGATAGTTTTAAGGAA-GCAGTAAT 218 Query 297232 GATGTTGAATAATTCCAAATCTAAAGAAGTAAGAAAATATTACATTAAATTAGAAAAAAT 297291 ||||||||||||| ||| |||||||||| |||| |||||| || || |||||||||| Sbjct 217 GATGTTGAATAATCATAAAGCTAAAGAAGTTAGAAGATATTATATACAACTAGAAAAAAT 158 Query 297292 ATTTTATTCTT 297302 ||| ||||||| Sbjct 157 ATTCTATTCTT 147 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 60361 AAGAATAAAATGTTTTTTCTAATTTAAGATAATATCTTCTGACTTCTTTGCATTTGGAAT 60420 ||||||| ||| ||||||||| || | |||||||||||| |||||||| ||| || Sbjct 147 AAGAATAGAATATTTTTTCTAGTTGTATATAATATCTTCTAACTTCTTTAGCTTTATGAT 206 Query 60421 TATTTAACATCATTATCGCTTCTTTAAAATTATCAACAGGAATTAATATCCATCTTTTTA 60480 |||| |||||||||| ||||| |||||| ||||| | | ||| ||||| | ||| Sbjct 207 TATTCAACATCATTACTGCTTCCTTAAAACTATCAGTTGTTAATAAAATCCAACGTTTAG 266 Query 60481 AATGTATAGT 60490 |||| || || Sbjct 267 AATGAATTGT 276 >seq71986 Length=2235 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || || | || ||||| | ||| | ||||| || || |||||| Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || | || || | ||||||||| || || || | |||||| ||||| || ||| Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || ||||| || || || || |||||||| ||| | ||| || ||| ||| Sbjct 607 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAACT 666 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||||||||| || ||||| || | |||||||||||||| Sbjct 667 TCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTT 716 >seq97621 Length=3513 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| |||||| || || | ||| || |||| || | ||||| ||||| || Sbjct 3310 CTCTTTCTGGATATTGTAGTCGCTGAGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAA 3369 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| | |||||| ||||| || || || |||||||| || || ||||| ||| ||||| Sbjct 3370 GATAAGTCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATTTTTGCTTTCACATT 3429 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 || | ||| |||| || || |||| ||||||||| || || || ||||| || | Sbjct 3430 CTCAATGGTATCGGACGGCTCAACCTCTAAAGTAATGGTCTTTCCGGTCAATGTCTTCAC 3489 Query 192525 AAATATCTGCATT 192537 ||||||||||||| Sbjct 3490 AAATATCTGCATT 3502 >seq95232 Length=1676 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||| ||| |||| | |||| || | |||||| || ||||| || ||||| Sbjct 202 ATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATATCAATCTT 261 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || || || || || || || || ||||| || | | Sbjct 262 TGCTGATCCGGAGGAATNNNNNNNTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTA 321 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || || |||||||| ||||| || || || ||||| || | ||| |||||| Sbjct 322 TCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAGATCTGC 381 Query 192535 ATTTTA 192540 |||||| Sbjct 382 ATTTTA 387 >seq64116 Length=3934 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| || ||||| ||| | || || || | ||| |||| ||||||||| || || || Sbjct 3095 ACACGCGAAATCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACTGAACGTCAA 3036 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 ||| ||||| | ||| | |||||||||||| ||||| || || || || | |||||| Sbjct 3035 TCCAGGCATAAGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACCACTAAAGAA 2976 Query 49943 TATACCCTCGACACACGCAAATGC 49966 || || ||||| |||| || || Sbjct 2975 AATTCCTTCGACTGACGCGAAAGC 2952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983147102990850