Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq53154 158 2e-33 seq71986 127 4e-24 seq97621 98.7 2e-15 seq64116 87.8 3e-12 >seq53154 Length=623 Score = 158 bits (174), Expect = 2e-33 Identities = 178/236 (75%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 49422 AAGAATAAAATGTTTTTTCTAATTTGAGATAATATCTTCTGACTTCTTTGCATTTAGAAT 49481 ||||||| ||| ||||||||| || | |||||||||||| |||||||| |||| || Sbjct 147 AAGAATAGAATATTTTTTCTAGTTGTATATAATATCTTCTAACTTCTTTAGCTTTATGAT 206 Query 49482 TATTTAACATCATTATAGCTTCTTTAAAATTATCAACAGGCATTAATATCCATCTTTTTA 49541 |||| |||||||||| ||||| |||||| ||||| | | ||| ||||| | ||| Sbjct 207 TATTCAACATCATTACTGCTTCCTTAAAACTATCAGTTGTTAATAAAATCCAACGTTTAG 266 Query 49542 AATGTATAGTATGCGGATTAGATTCttttatatcattttgtatatattcatataatttta 49601 |||| || || || | ||| |||||| | |||||||| ||||||||| ||| Sbjct 267 AATGAATTGTTCTTAAATCACATT-TTTTAT----TCTTGTATATGTTCATATAAATTTG 321 Query 49602 ttttatcatttttataatctatgtgttcgtattctatgttattttcttttagaaat 49657 ||| |||||||||||||| || ||||| | ||||| |||||| ||||| |||| Sbjct 322 CTTTTTCATTTTTATAATCAATTTGTTCAAAATCTATATTATTT--TTTTAAAAAT 375 >seq71986 Length=2235 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| || || | || ||||| | ||| | ||||| ||| || ||||| Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || |||| || | ||||||||| || || || | |||||| || || || ||| Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || ||||| || || || || |||||||| ||| ||||| || ||| ||| Sbjct 607 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAACT 666 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||||||||| || ||||| || | ||||||||||||||| Sbjct 667 TCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTT 716 >seq97621 Length=3513 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||| || || | |||||| || || || || || |||||||| || || ||| Sbjct 3356 TGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATT 3415 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || ||||| |||| || || |||| ||||||||| || || Sbjct 3416 TTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACCTCTAAAGTAATGGTCTTTCCG 3475 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| || | |||||||||||| Sbjct 3476 GTCAATGTCTTCACAAATATCTGCATT 3502 >seq64116 Length=3934 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 39118 ATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAA 39177 |||| | ||| || ||||| ||| | ||||| || | ||| |||| ||||||||| | Sbjct 3102 ATAGAAGACACGCGAAATCGCAATGAAGTCCTTCATCGCGAGAAATAAGTTCATTACTGA 3043 Query 39178 AAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAG 39237 | || ||||| ||||| | ||| | |||||||||||| ||||| || || || || | Sbjct 3042 ACGTCAATCCAGGCATAAGTCCGCGCTTTTTAAGCCAGAATATGGAAGCGAAGGAACCAC 2983 Query 39238 AAAAGAATATACCCTCCACACACGCAAATGC 39268 |||||| || || || || |||| || || Sbjct 2982 TAAAGAAAATTCCTTCGACTGACGCGAAAGC 2952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903940417171800