Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq71986 158 9e-34 seq95232 122 7e-23 seq97621 116 3e-21 seq102572 105 5e-18 >seq71986 Length=2235 Score = 158 bits (174), Expect = 9e-34 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| || || ||||||||||| || ||||||||||||||||| ||||| Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || ||||||||||| || || |||| | ||| |||||||| || || Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||||||||| || ||| |||| || ||| | |||| || ||| ||| || Sbjct 607 ATACCCTCTTTGTCCTG-AATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAAC 665 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||| || ||||| || || || || || || |||||||||||||| Sbjct 666 TTCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATTTT 716 >seq95232 Length=1676 Score = 122 bits (134), Expect = 7e-23 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||||||||||||||| | || | ||| ||||||||||| || ||| ||| Sbjct 194 CTTTTTGAATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATA 253 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 ||||||||||||||||||| ||||| ||||| || ||| |||| || ||| | Sbjct 254 TCAATCTTTGCTGATCCGGAGGAATNNNNNNNTTGTCCTG-AATCTTTGCCTTCACATTC 312 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || || ||| | || || || ||||| || || || || || || || || ||| Sbjct 313 TCGATGGTATCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACA 372 Query 29776 AATATCTGCATTTTA 29790 || |||||||||||| Sbjct 373 AAGATCTGCATTTTA 387 >seq97621 Length=3513 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || |||| ||| || || || ||||| || || || || || | ||||| Sbjct 3284 AAACGAAGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTGAGTGTGCGG 3343 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| ||||| ||||| ||||| | || | ||| ||||||||||| ||||| || ||| Sbjct 3344 CCATCTTCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGAATGCCTTCT 3403 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||| || | |||| ||| ||| | || | || || || | || || || | ||| Sbjct 3404 TTGTCCTGGATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACCTCTAAAGTA 3463 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || || || ||||||||||||||| Sbjct 3464 ATGGTCTTTCCGGTCAATGTCTTCACAAATATCTGCATT 3502 >seq102572 Length=1560 Score = 105 bits (116), Expect = 5e-18 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || ||||||||||| || || |||||||| || || ||||| Sbjct 1438 TCCTCCGCGAAGACGGAGAACCAAATGAAGWGTTGACTCTTTTTGWATRTTGTAATCRSW 1497 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||||| || || ||||||||||| ||| | |||||||||||||||||||| || Sbjct 1498 AAGAGTGCGGCCGTCTTCCAGTTGTTTGCCCGCAAAAATCAATCTTTGCTGATCCGGAGG 1557 Query 29679 AAT 29681 ||| Sbjct 1558 AAT 1560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384723089554611