Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq93292 215 1e-50 seq71986 187 5e-42 seq97621 156 8e-33 seq95232 143 5e-29 seq95747 114 3e-20 seq36051 89.7 1e-12 >seq93292 Length=5156 Score = 215 bits (238), Expect = 1e-50 Identities = 321/450 (71%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 198180 AGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACAGTCTACT 198239 |||||| | | |||||||||||||| |||||| || |||| |||| | || | | Sbjct 997 AGAGAATTAGCCGATAATTTTTGTTATTATAATGAAAATTATGATAAATTGGAGGGCAGT 1056 Query 198240 CACGCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATCTAT 198299 | | |||||| ||| ||||||| | ||||||| || || ||| ||||| | ||| Sbjct 1057 TATGAATGGGCACGAAAAACATTAAATGATCACAAAAAAGACAAAAGAGAGTATTTGTAT 1116 Query 198300 TCTATTAAACAACTCGAAAAGG--CGGAAACAC-ATGACCCTCTATGGAATGCATCGCAA 198356 | | || | | ||||| | | || ||| ||||| |||||||||| |||| Sbjct 1117 AGTTTGGAAGAGTTTGAAAAAGGTCTGACTCACGATGACT---TATGGAATGCGGCGCAG 1173 Query 198357 ATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAG 198416 ||||| ||| | ||||| |||||||||||| | ||| | | ||||| ||||| || || Sbjct 1174 ATACAAATGGTTAGAGACGGAAAAATGCATGGATTTCTCCGTATGTATTGGGCAAAGAAA 1233 Query 198417 ATACTTGAATGGACAAGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAA 198475 ||||| || ||||| | |||| ||| | || || || || | ||| ||| |||| | Sbjct 1234 ATACTGGAGTGGACCGAATCACCCGAACAAGCGTTAGAATT-TGCTATTTATTTAAATGA 1292 Query 198476 TAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTG 198535 ||| |||||| | || || | ||||| ||||||||||| ||||||||||||||||| || Sbjct 1293 TAAATACGAATTGGATGGAAGAGATCCGAACGGATACGTCGGTTGTATGTGGTCTATATG 1352 Query 198536 CGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAA 198595 || | || |||| | |||||||| || ||| | ||||| || ||| | | |||||| Sbjct 1353 TGGTGTTCACGATCAGGGATGGAAAGAGAGGCCTGTCTTTGGAAAAATACGTTTTATGAA 1412 Query 198596 TTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 ||| | || | ||| ||||| ||||| Sbjct 1413 CTATAATGGATGTAAACGTAAATTCGATGT 1442 >seq71986 Length=2235 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| || ||||| || || ||||| |||||||| || || || |||||| Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||||| |||||||| || || || || ||||| || ||||| |||||| Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || || ||||||||||| |||||||| || || |||||| | | ||| ||| Sbjct 607 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCTATGGTATCACTCGCTTCAACT 666 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || || || || ||||| ||||| || |||||||||||| Sbjct 667 TCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCATT 714 >seq97621 Length=3513 Score = 156 bits (172), Expect = 8e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| || || | || || || || |||||||| ||||| || || || | | Sbjct 3284 AAACGAAGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTGAGTGTGCGG 3343 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || ||||||||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 3344 CCATCTTCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGAATGCCTTCT 3403 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || || || |||||||| ||||| ||||| ||||| || || || || ||||| Sbjct 3404 TTGTCCTGGATTTTTGCTTTCACATTCTCAATGGTATCGGACGGCTCAACCTCTAAAGTA 3463 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || ||||| ||||| ||||||||||||||| Sbjct 3464 ATGGTCTTTCCGGTCAATGTCTTCACAAATATCTGCATT 3502 >seq95232 Length=1676 Score = 143 bits (158), Expect = 5e-29 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || |||||||| || | |||| || ||||| ||||||||||| ||||| | Sbjct 194 CTTTTTGAATGTTATAATCGCTTAAAGTTCTTCCATCTTCGAGTTGTTTTCCGGCAAATA 253 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | |||||| ||||| ||||| || || || ||||||||||| || ||||| | Sbjct 254 TCAATCTTTGCTGATCCGGAGGAATNNNNNNNTTGTCCTGAATCTTTGCCTTCACATTCT 313 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | || ||||| ||| || || || | ||| || ||||| |||||||| ||||| |||| Sbjct 314 CGATGGTATCCGAAGGCTCGACCTCTAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAA 373 Query 82801 ATATCTGCATT 82811 | ||||||||| Sbjct 374 AGATCTGCATT 384 >seq95747 Length=1806 Score = 114 bits (126), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 82597 GCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGT 82656 ||| ||||||||| |||||| | |||| ||| || | ||| | | ||| | | |||| Sbjct 682 GCAAAACTAAGTGAAGAGTA-ACTCTTCCTGAATGCTGTAACGACAGAGAGTCCAGCCGT 624 Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 ||| |||||||| |||||||| ||| | |||||| | ||||||||||||||| | | Sbjct 623 ATTCCAGTTGTTTATTCGCAAAGATGAGTGTCTGTTGAGCGGGAGGTATTCCTTCCGTGT 564 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATC---ATTAGGTTCTACTTCCAAAGTTA 82773 | | ||||||||| |||||||| || | |||| | | || | |||| |||||| | Sbjct 563 CATTAATCTTTGCCTTTACATTCTCCACATTATCTAAAGTTGGGTTAACTTTCAAAGTCA 504 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATAT 82804 ||||| || || || |||| || || || Sbjct 503 AGGTCTTTCCGGTGAATATCTTCACGAAGAT 473 >seq36051 Length=2023 Score = 89.7 bits (98), Expect = 1e-12 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 144060 GCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 144119 || || ||| | | ||| || || |||||||| | |||| |||||| |||||||||||| Sbjct 1869 GCTAAGATATCGAGTGGAATTTGTGATAATTTGTTGACATGTATAGTCAGAGCCTGGGAT 1928 Query 144120 ATAAATAAACCTCTTATTTTTTGC-CCCGCTATGAATACCCTTATGTGGGAACATCCT 144176 ||| |||||||| |||| ||||| ||||| |||||| | |||||| ||||||| Sbjct 1929 TTAAGTAAACCTC-TATTATTTGCGCCCGCGATGAATGTTCACATGTGGACACATCCT 1985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980497894642469