Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq71986 111 1e-19 seq102572 87.8 1e-12 seq97621 84.2 1e-11 >seq71986 Length=2235 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| || | |||||||| ||||| |||||||| ||||||||||| | Sbjct 487 CCTCCTCTCAGCCGAAGAACCAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCACTG 546 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | |||||| || || || || | | ||||||||| | || Sbjct 547 AGAGTACGGCCGTCTTCGAGTTGTTTACCCGCGAATATAAGTCTCTGCTGATCGGGAGGT 606 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| ||| || || | |||| || | ||| || || | ||| || Sbjct 607 ATACCCTCTTTGTCCTGAATCTT-TGCCTTTACATTCTCTATGGTATCACTCGCTTCAAC 665 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| || || || || || || |||||||| Sbjct 666 TTCAAGAGTGATGGTTTTACCCGTCAATGTCTTCACGAATATCTGCAT 713 >seq102572 Length=1560 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || ||||||||| || |||||||| || ||||| |||| ||| Sbjct 1457 ACCAAATGAAGWGTTGACTCTTTTTGWATRTTGTAATCRSWAAGAGTGCGGCCGTCTTCC 1516 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | |||||| || ||||||||||| | |||||||| Sbjct 1517 AGTTGTTTGCCCGCAAAAATCAATCTTTGCTGATC 1551 >seq97621 Length=3513 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | |||| ||| || || |||||| || || ||||| ||| | Sbjct 3275 CCACCGCGTAAACGAAGGACCAGATGGAGGGTTGACTCTTTCTGGATATTGTAGTCGCTG 3334 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | |||||||| || || || | | ||||||||| | || Sbjct 3335 AGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATAAGTCTCTGCTGATCCGGAGGA 3394 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| || || |||| || | ||| ||| | || || Sbjct 3395 ATGCCTTCTTTGTCCTGGATTTT-TGCTTTCACATTCTCAATGGTATCGGACGGCTCAAC 3453 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || || || || ||||| |||||||| Sbjct 3454 CTCTAAAGTAATGGTCTTTCCGGTCAATGTCTTCACAAATATCTGCAT 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328280673520320