Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq71986 131 2e-25 seq95232 105 8e-18 seq64116 93.3 5e-14 seq101090 82.4 9e-11 >seq71986 Length=2235 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| | || || || || || |||||||| ||||| | | Sbjct 714 AATGCAGATATTCGTGAAGACATTGACGGGTAAAACCATCACTCTTGAAGTTGAAGCGAG 655 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | ||| | ||||| || ||||||||||| ||||| || ||||| || || Sbjct 654 TGATACCATAGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATACCTCCCGATCA 595 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || ||||| |||||||| || | ||||| || || || || Sbjct 594 GCAGAGACTTATATTCGCGGGTAAACAACTCGAAGACGGCCGTACTCTCAGTGATTACAA 535 Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609 | ||||| ||||| ||||||||| Sbjct 534 CATTCAAAAAGAATCAACTCTTCAT 510 >seq95232 Length=1676 Score = 105 bits (116), Expect = 8e-18 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 ||| |||||| |||||||| ||||| | || || ||||| || ||||| ||||| ||| Sbjct 388 CTAAAATGCAGATCTTTGTGAAGACATTGACAGGAAAGACCATCACTCTAGAGGTCGAGC 329 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | |||| ||| | ||| ||||||| || ||||||||||| |||||||| | Sbjct 328 CTTCGGATACCATCGAGAATGTGAAGGCAAAGATTCAGGACAANNNNNNNATTCCTCCGG 269 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 | ||||| | | || ||||| || || |||||||| |||| Sbjct 268 ATCAGCAAAGATTGATATTTGCCGGAAAACAACTCGAAGATG 227 >seq64116 Length=3934 Score = 93.3 bits (102), Expect = 5e-14 Identities = 215/319 (67%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 ||||| || | || ||||||||||||||| ||| || ||| ||| || |||||||| Sbjct 2952 GCTTTCGCGTCAGTCGAAGGAATTTTCTTTAGTGGTTCCTTCGCTTCCATATTCTGGCTT 3011 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 |||||||| || || ||||| || || |||| || || || || ||||| || || Sbjct 3012 AAAAAGCGCGGACTTATGCCTGGATTGACGTTCAGTAATGAACTTATTTCTCGCGATGAA 3071 Query 64846 GGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCACAT 64905 || || || || || ||| | || ||||| ||| | || ||||||||| | Sbjct 3072 GGACTTCATTGCGATTTCGCGTGTCTTCTATTCAGACACATTGAGAACAAACCATATGAG 3131 Query 64906 GGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCC 64965 | || | | | ||||| ||| || || | |||||| |||| || | || | Sbjct 3132 GAGAAAGTTTTGCAAATAGTGAAAGAAGCGGTTGTTATTGAACAGGAGTTTCTAACGGAA 3191 Query 64966 GCGCTTCC-GTGTCGTCTCATCGGCATGGATGCCGATAAGATGAA-ACAGTATATCGAAT 65023 || | || ||| ||| || |||||| || |||| ||||| ||| || ||||||| Sbjct 3192 GCATTGCCTGTG-AATCTGATTGGCATGAATTGCGATCTCATGAAGACA-TACATCGAAT 3249 Query 65024 TTGTAGCAGATCGCCTGCT 65042 || || ||| | ||||| Sbjct 3250 ACGTGGCCGATAGACTGCT 3268 >seq101090 Length=3278 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24985 TTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACG 25044 |||| | |||||| |||| || || ||||||||||| || || ||||| ||||| | Sbjct 207 TTGAATTAGGAAACTTAGACGCAAAGCGTGATTGGGGTCACGCCAGAGACTATGTCGAAG 266 Query 25045 CCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGA 25104 | ||||||| |||||| |||||| ||| || || || | ||| || |||||| | Sbjct 267 CGATGTGGCTCATGCTTCAACAGGATACACCTGAAGACTATGTTATATCCACCGGAGAAT 326 Query 25105 CGCATTCTATCAGGGATTTTATT 25127 | |||||| ||| || ||| || Sbjct 327 CTCATTCTGTCAAAGAATTTGTT 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569557084121520