Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq93292 174 1e-38 seq97621 132 4e-26 seq71986 118 9e-22 >seq93292 Length=5156 Score = 174 bits (192), Expect = 1e-38 Identities = 194/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 135504 GAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGT 135563 |||| || |||||||| |||||| | || |||||||||||||| || ||| |||| ||| Sbjct 1187 GAGACGGAAAAATGCATGGATTTCTCCGTATGTATTGGGCAAAGAAAATACTGGAGTGGA 1246 Query 135564 CTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAG 135623 | | ||| || | | | ||| || || || || | ||| |||||| | ||| || | Sbjct 1247 CCGAATCACCCGAACAAGCGTTAGAATTTGCTATTTATTTAAATGATAAATACGAATTGG 1306 Query 135624 ATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATC 135683 ||||| | ||| | || || ||||| ||||||||||||||||| || ||||| ||||||| Sbjct 1307 ATGGAAGAGATCCGAACGGATACGTCGGTTGTATGTGGTCTATATGTGGTGTTCACGATC 1366 Query 135684 AAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTA 135743 | |||||||| ||| | || ||||| || || || | |||||||||| | || |||| Sbjct 1367 AGGGATGGAAAGAGAGGCCTGTCTTTGGAAAAATACGTTTTATGAACTATAATGGATGTA 1426 Query 135744 CAAGAAAATTTAATGTAAA 135762 | | ||||| |||| || Sbjct 1427 AACGTAAATTCGATGTCAA 1445 >seq97621 Length=3513 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || ||||||| ||| | |||||| | || || || |||||| Sbjct 3501 ATGCAGATATTTGTGAAGACATTGACCGGAAAGACCATTACTTTAGAGGTTGAGCCGTCC 3442 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| |||||| || |||||||||||||| || || ||||| Sbjct 3441 GATACCATTGAGAATGTGAAAGCAAAAATCCAGGACAAAGAAGGCATTCCTCCGGATCAG 3382 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || ||||| | ||||| | || | ||| ||||| Sbjct 3381 CAGAGACTTATCTTCGCTGGAAAACAGCTCGAAGATGGCCGCACACTCAGCGACTACAAT 3322 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| ||| | ||| |||| | ||||| || |||||| Sbjct 3321 ATCCAGAAAGAGTCAACCCTCCATCTGGTCCTTCGTTTACGCGGTGGC 3274 >seq71986 Length=2235 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || |||| || || | || ||||||||||| ||| || Sbjct 713 ATGCAGATATTCGTGAAGACATTGACGGGTAAAACCATCACTCTTGAAGTTGAAGCGAGT 654 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||| ||||| |||||||| || ||||| |||||||| Sbjct 653 GATACCATAGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATACCTCCCGATCAG 594 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| ||| || |||||| | |||||| | || | ||||||||| Sbjct 593 CAGAGACTTATATTCGCGGGTAAACAACTCGAAGACGGCCGTACTCTCAGTGATTACAAC 534 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||| || || || | ||||||||| | || || | || ||| Sbjct 533 ATTCAAAAAGAATCAACTCTTCATTTGGTTCTTCGGCTGAGAGGAGGC 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434343921721920