Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq71986 140 2e-28 seq95232 98.7 7e-16 seq102572 91.5 1e-13 seq97621 86.0 4e-12 >seq71986 Length=2235 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || || | ||||| ||||| |||||||| |||||||| | Sbjct 716 AAAATGCAGATATTCGTGAAGACATTGACGGGTAAAACCATCACTCTTGAAGTTGAAGCG 657 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | || | |||| ||| ||| |||||||| ||| |||| || ||| Sbjct 656 AGTGATACCATAGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATACCTCCCGAT 597 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | ||||| || || |||||||| ||||||| || ||| | | |||||| Sbjct 596 CAGCAGAGACTTATATTCGCGGGTAAACAACTCGAAGACGGCCGTACTCTCAGTGATTAC 537 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| |||||||| || || | ||||| ||| | || || ||||||| Sbjct 536 AACATTCAAAAAGAATCAACTCTTCATTTGGTTCTTCGGCTGAGAGGAGG 487 >seq95232 Length=1676 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 |||||||||||| || || || || | || ||||| || |||||||| || || || | Sbjct 387 TAAAATGCAGATCTTTGTGAAGACATTGACAGGAAAGACCATCACTCTAGAGGTCGAGCC 328 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 |||| || | || ||| | || |||| | || ||||| | || || | Sbjct 327 TTCGGATACCATCGAGAATGTGAAGGCAAAGA-TTCAGGACAANNNNNNNATTCCTCCGG 269 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 |||| || | || ||||||||||| |||||||| ||||| | | | |||||| |||||| Sbjct 268 ATCAGCAAAGATTGATATTTGCCGGAAAACAACTCGAAGATGGAAGAACTTTAAGCGATT 209 Query 23786 ACAACATACAAAAAG 23800 | ||||| ||||||| Sbjct 208 ATAACATTCAAAAAG 194 >seq102572 Length=1560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || ||||| || | || || ||||| ||||||||||||||||||| |||||| | Sbjct 1557 CCTCCGGATCAGCAAAGATTGATTTTTGCGGGCAAACAACTGGAAGACGGCCGCACTCTT 1498 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||||| || ||||||||||| || | ||||| ||| | | | || |||||| Sbjct 1497 WSYGATTACAAYATWCAAAAAGAGTCAACWCTTCATTTGGTTCTCCGTCTTCGCGGAGGA 1438 >seq97621 Length=3513 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || | || ||||| || || ||| | || ||||| | | Sbjct 3502 AATGCAGATATTTGTGAAGACATTGACCGGAAAGACCATTACTTTAGAGGTTGAGCCGTC 3443 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| |||||| | ||||||||||| | || || |||| Sbjct 3442 CGATACCATTGAGAATGTGAAAGCAAAAA-TCCAGGACAAAGAAGGCATTCCTCCGGATC 3384 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || || || || ||||| || ||||| | ||||| | |||| |||| Sbjct 3383 AGCAGAGACTTATCTTCGCTGGAAAACAGCTCGAAGATGGCCGCACACTCAGCGACTACA 3324 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || |||||||| || Sbjct 3323 ATATCCAGAAAGAGTCAAC 3305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337574289160868