Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Platynothrus_20peltifer_20[genbank_20GCA_5F000988905.1_202015-05-06] 105,671 sequences; 100,532,934 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq97621 147 5e-30 seq95232 147 5e-30 seq71986 140 8e-28 seq47905 96.9 8e-15 >seq97621 Length=3513 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || ||||| || || || | ||||| || || || Sbjct 3498 CAGATATTTGTGAAGACATTGACCGGAAAGACCATTACTTTAGAGGTTGAGCCGTCCGAT 3439 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||| || |||||||||||||| || |||||||| ||||| Sbjct 3438 ACCATTGAGAATGTGAAAGCAAAAATCCAGGACAAAGAAGGCATTCCTCCGGATCAGCAG 3379 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| |||||||||||||||||||| | || || ||| || || || Sbjct 3378 AGACTTATCTTCGCTGGAAAACAGCTCGAAGATGGCCGCACACTCAGCGACTACAATATC 3319 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| ||||| || ||||| || Sbjct 3318 CAGAAAGAGTCAACCCTCCATCTGGT 3293 >seq95232 Length=1676 Score = 147 bits (162), Expect = 5e-30 Identities = 154/203 (76%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177909 AAGGT-TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGA 177967 ||||| |||||||| | || || ||||| || | |||||||| || ||||| || || Sbjct 393 AAGGTCTAAAATGC---AGATCTTTGTGAAGACATTGACAGGAAAGACCATCACTCTAGA 337 Query 177968 GGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| || || || ||||||||||| || || ||||||||||||||| || Sbjct 336 GGTCGAGCCTTCGGATACCATCGAGAATGTGAAGGCAAAGATTCAGGACAANNNNNNNAT 277 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 |||||||| |||||| || | || || ||||||||||| |||||||||||||| ||| | Sbjct 276 TCCTCCGGATCAGCAAAGATTGATATTTGCCGGAAAACAACTCGAAGATGGAAGAACTTT 217 Query 178088 TGCCGATTATAACGTCCAAAAAG 178110 |||||||||| | ||||||| Sbjct 216 AAGCGATTATAACATTCAAAAAG 194 >seq71986 Length=2235 Score = 140 bits (154), Expect = 8e-28 Identities = 161/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || | || || ||||| ||||| || || || ||| Sbjct 716 AAAATGC---AGATATTCGTGAAGACATTGACGGGTAAAACCATCACTCTTGAAGTTGAA 660 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| ||||| || || |||||||||||||||||| || || ||||| Sbjct 659 GCGAGTGATACCATAGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATACCTCCC 600 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| ||||||| ||||| || ||||| |||||||| || | ||||| ||| Sbjct 599 GATCAGCAGAGACTTATATTCGCGGGTAAACAACTCGAAGACGGCCGTACTCTCAGTGAT 540 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||| | |||||||||||||| || ||| | ||| Sbjct 539 TACAACATTCAAAAAGAATCAACTCTTCATTTGGTT 504 >seq47905 Length=581 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| || ||| | || ||||| || ||||| | ||||| || Sbjct 472 AAAATGC---AAATCTTCGTCAAGACTTTGACCGGAAAGACTATCACTTTAGAGGTCGAG 528 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||||| ||||||||||| ||| ||||||||||||||||||||| || Sbjct 529 CCCTCRGACACTATCGAGAACGTGAAAGCAAAGATTCAGGACAAAGAAGGTAT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202101456667174