Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2594 506 2e-138 seq142 109 7e-19 >seq2594 Length=7326867 Score = 506 bits (560), Expect = 2e-138 Identities = 1178/1757 (67%), Gaps = 36/1757 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| ||||||| ||| |||||||| || || | ||| | ||||| | |||||| Sbjct 141626 GCAGGTTTAGTACGTAAATAATACATTCCAGTCTTCAAACCCATTTTCCATGCATAAAAA 141567 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| || | |||| ||| | || | || | ||| ||||| | || || || Sbjct 141566 TGTATAGACGTCAATTTGCCGTAATTAGGGGCAGCCACATGTATATTGAATGACTGGCTC 141507 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || ||||| || ||||| ||||||| || | || || || ||| ||| Sbjct 141506 TGATCTATAAATGCTCCTCTATCTGCGGCCATTTGAATAGTTGTTTTGACTGAAATCTCC 141447 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATAGA 53064 || | ||||||||| || || || | | |||| |||| | |||| || ||||| Sbjct 141446 CAGACAGTTTTATACAAGTCCCTGATT-TCTTTAGGAATAGCCTCAATATTTTGTATAGA 141388 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 |||| || ||||| || || || || |||| ||| || | | || ||||| Sbjct 141387 TCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATCCCACAAATCTGCTTCTGTTAA 141328 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184 | | | | | ||| |||| || ||||||||||||||||||| ||||| | ||| Sbjct 141327 ATCCCGCAACAAATGATGATTTACCACTTGAAATTCTCCAGACAGTACTCGTCTTTGGTA 141268 Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244 ||||||| || | || || | || ||||| || || | ||||||||||| || || Sbjct 141267 AATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTGAGCAGTGGAAGC 141208 Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 53302 ||| |||||||| || | | | ||| | || || ||||| | ||||| || Sbjct 141207 AGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCC--ATGTTTGGCAATTTTTTCC 141150 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362 |||| || ||||| ||||||||| | || |||| Sbjct 141149 TTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTTCCACATCTCATACTGTAAT 141090 Query 53363 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 ||||| | ||| | | || | ||| |||| || || ||| || | || || || | Sbjct 141089 ATACCTTGACTAACAGGACTA-CCTTCATAAGTTTCATATACACCATATTTTTCTGCCAA 141031 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 ||| ||||| || ||||| ||||| |||||||| ||||| || || | | ||| || | Sbjct 141030 TTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATATTTGTTGATTCAGTTT 140971 Query 53482 --TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 53539 | | ||| | | | ||| | ||| | | | ||| | ||| ||||| || Sbjct 140970 AATAGCACTTTC--GTTTTCATAAGGAATGCGCATCAATACAAATGTGTCAGCTAAACCC 140913 Query 53540 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 53599 || |||||||| || ||||||||||||||| |||| || | | |||||||| | ||| Sbjct 140912 TGCACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTTTGCTTCTGGCACTGGA 140853 Query 53600 TAATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCC 53656 ||| | || | ||| ||||||||||| ||||| |||||||| || ||| ||| Sbjct 140852 TAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAATT---TTAGTCACTTCC 140796 Query 53657 TTCAGTTTGAGAAAATCAAATTGTCCATCT--ATT-ACAAACATGTTCAATGCAATAGAT 53713 || || || | ||||| || | ||| ||| |||||||| || || ||||| ||| Sbjct 140795 TTAAGCTTAATAAAATTGTATGTTTTATCATCATTCACAAACATATTTAACGCAATGGAT 140736 Query 53714 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 53773 |||| ||| || || ||| |||| ||| | || | | || || || || | Sbjct 140735 GCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTCAACAATTTCTGTACACAAG 140676 Query 53774 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 53833 || || ||||| || || || ||||||| |||||||||||| | ||||| ||||||||| Sbjct 140675 TTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTATTACAGGCATCCTTA 140616 Query 53834 TAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACA 53893 || || || |||| || |||||||||| || | |||||||| |||||||| | | Sbjct 140615 TATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCTTTCCATAGTATT 140556 Query 53894 CGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTT 53951 |||| || | | | || || | ||| || | || ||| | ||| | | | Sbjct 140555 TGAGCTTTAACTT--GCTTGACATAACGTTTTTCCTGTTCATATTTTTCATAGAGTGCCT 140498 Query 53952 CAAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGAC 54010 |||| || || |||||| || | | | | ||||||| | |||| || ||||| | | Sbjct 140497 CAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGAGAATCATGAGGGCACATAAGACTC 140439 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 || ||| | | | || || ||||||||||| | ||| || ||||| | ||| ||| || Sbjct 140438 CAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCTGGGATCCACAAAGC-ATAGAA 140380 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || ||||| | ||| |||||| || || ||||||||| | ||| | || | | Sbjct 140379 CAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTTTTCAAATCCAAAAATTCGAA 140320 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 ||||| | |||||| || || ||||| | | | |||| || ||||| ||||| || Sbjct 140319 TATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCTCCTGGTCGTTTATTTCCACC 140260 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||||| | ||||| || ||||| || ||||| | |||||| |||| || |||||| || Sbjct 140259 TTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAACATAGGAACAACACCATTTGA 140200 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 54307 | ||||| || || | |||||| | || | || | ||| | | | | ||| | | Sbjct 140199 AACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTAATGCAATGC-ACATGA-ACA 140142 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || || || || || || ||||| ||| | ||||| || ||||| || ||| Sbjct 140141 CCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTTTAAAGTGTCATATATCCCC 140082 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427 || || || ||||| |||| || ||||||||| ||||| || | | ||| Sbjct 140081 TCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGACAACTGAGGTCTTGGGGTT 140022 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 | ||| ||| | || ||| ||||| ||||| |||||||||| | || |||||| Sbjct 140021 GCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATTTTTCAGATAATAAATTGTAT 139962 Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 || | |||||| | || ||||| ||| ||||| | | || | ||||||||| Sbjct 139961 GTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAATAGATACTCTCATTAACATA 139902 Query 54548 TGCTGAGGTCTTTCAAC 54564 ||||| ||||| ||||| Sbjct 139901 TGCTGTGGTCTCTCAAC 139885 >seq142 Length=7807734 Score = 109 bits (120), Expect = 7e-19 Identities = 106/134 (79%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 ||||| |||| ||| | | || |||| || | ||||||||||||||||||||||||| Sbjct 5993919 GTTAGGTTATGTCAACAAGT--TACCTTT-GACAAATCCACTTCTTCCACTGTCCAAAAT 5993863 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 24713 ||||| || || || || ||||| ||||| || ||| |||| |||||||| || || ||| Sbjct 5993862 GATGCTTCCGCTTTCTTGTACATTTTCCATATATCAGGATACTGAATTGGGAATATTACA 5993803 Query 24714 AATCTATTTGGATT 24727 |||| ||||||| Sbjct 5993802 AATCGTCTTGGATT 5993789 Score = 109 bits (120), Expect = 7e-19 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || ||| ||| | ||| ||| || || ||||| ||||| || || | ||| | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || ||||| ||||| || |||||||| || ||||| ||||| || |||| Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 24331 | | | | ||| ||| | ||| |||| || ||||||| | ||||||| || Sbjct 5994892 CGACGATACGTTCACCAAATGTGGC--TGTCTTGCTGGCGATCCACTGTAGAGCCCAGTC 5994835 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||||||||||| ||||| |||| ||||| || || || || Sbjct 5994834 AGCCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAA 5994793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593664135170640