Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq557 277 1e-69 seq5264 116 3e-21 >seq557 Length=1183051 Score = 277 bits (306), Expect = 1e-69 Identities = 602/892 (67%), Gaps = 17/892 (2%) Strand=Plus/Plus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || |||||||| || | ||| ||||| || || || |||| || || || | | || Sbjct 1026099 ACACCGGTCCATCCTCTGCCATACATAGCTACACCTACAACAATCTTCTTCGAACTCACA 1026158 Query 97440 CCTTGTTCCAGTAAC--GCATCGA-CAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTC 97496 ||||| | |||| | || | || || ||| ||| ||||| ||| | | || Sbjct 1026159 CCTTGAGC---TAACAGGAATTTAACACCGAAATCTGTCGTGTAAGTCTCCTTTGGCCTC 1026215 Query 97497 CAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTA 97556 || |||||||| | | || || | ||||||| ||||||||| || ||||| Sbjct 1026216 CATGAAGGCGCGTACAAAGACGTCTGATGGCCCAAAGTGTCGTTTGACCAGGCTCCTTTG 1026275 Query 97557 AAATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACC 97616 || ||||| |||||| ||||| | ||| | | || || |||||| |||||| ||| Sbjct 1026276 AAGTCGTAGCTCATGAAGAATATATGGTCCATGTATTTCTGAGCTTCGTTGTAGTTCACC 1026335 Query 97617 ACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTT 97676 || || || || | || ||||| |||||| || | ||||| | | || ||| Sbjct 1026336 ACTTGGATTTTATCCCAACCTGCGCTGATAGCGGAAGTCAGCTCGTATTTCTTTCCAGTT 1026395 Query 97677 TGCACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTG 97736 | || | |||| ||||| || || || || | || || || | || || Sbjct 1026396 TCAGCTGATAACTCGTTGAGCATCTCACGGAGTTCCTTCATCA---GACT-TACGTACA- 1026450 Query 97737 GCGTCACGCTCC---GCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCC 97793 | |||| || | | ||| || || ||||| ||||| ||||| || |||||| Sbjct 1026451 -CATCACCGTCTTTGGGACTGCCGAGGTTGGGATTAGCGCCTTTACCGCCAGGGAATTCC 1026509 Query 97794 CAATCGACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCT 97853 ||||||| || ||||||||||| |||||||| || || ||| || ||||| || || Sbjct 1026510 CAATCGATATCAACACCATCAAAGAATTTCCAGGTTTCCAGAAAATCTTTAACTGAAGCT 1026569 Query 97854 ACAAAAACGTTTCTTTTTTCAACGTC-GTGCATGAAATAGAACGGGTCCGACAGAGTCCA 97912 ||||| | ||| || ||| ||| | ||| |||| || || | || |||||| Sbjct 1026570 ACAAACCGATCTCTCTTAGATTTGTCAGTGAA-GAAGAAGAATGGATCAGCCAAAGTCCA 1026628 Query 97913 GCCTCCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTG 97972 || || || || || | ||||| || | || || ||| |||| | |||||| || Sbjct 1026629 TCCACCGATAGATGGCAAGATTTTCAGGTCAGGCTTAGCTTGTTTCAACATCATCAACTG 1026688 Query 97973 TCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTAC 98032 ||||| ||||| ||||| || |||||||| | |||| ||||| || ||||| || | Sbjct 1026689 GCCAAAGTTGCCCTTGTATGGCTCGTTCCATGAAGACAATCCCTTCTGTGGTTTCTGGAG 1026748 Query 98033 GGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTG 98092 || ||||| ||||| ||||||| || ||||| || || || || ||||||||||| || Sbjct 1026749 AGCTGCCCATGGATCATGGATGGACACCTTGAAGTCCTCTCGGCCGCTGCACGATCGCTG 1026808 Query 98093 CAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCA 98152 || ||||| ||||| || ||| || | |||||| || |||||||| ||||| Sbjct 1026809 CAAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATCGCCTCCGCA 1026868 Query 98153 GATGGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGG 98212 || || ||||| ||||||| ||| || | |||||| || | || || |||||| || Sbjct 1026869 AATTGGGATGAAGCCGTACAGCAAATGGGTTAAATTGGGAATAGGCACGCGGTCTACCGG 1026928 Query 98213 AAAGCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGACAATTTTA 98264 || | | || || ||||| ||||| || ||||| | |||| |||| Sbjct 1026929 GAATTTTCTAGGATAGACGCCCCATTCGACGAAATACGCTCCAACAACTTTA 1026980 >seq5264 Length=5978571 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | || || |||||||| |||||||| ||| ||| ||||| Sbjct 3783220 AAAATGCAGATCTTCGTGAAGACTTTGACGGGAAAAACCATCACCTTGGAAGTAGAACCA 3783279 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | || || || |||||||| || | ||| ||| Sbjct 3783280 TCTGATACAATTGAGAATGTAAAAGCCAAGATCCAAGATAAAGAGGGCATCCCCCCAGAC 3783339 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATT 25209 ||||| | | ||||| || ||||| || ||||||||| | | | ||| |||||| Sbjct 3783340 CAACAGCGGTTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACATTAT--CCGATT 3783397 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||||||| |||||| |||||||||| | ||||| || Sbjct 3783398 ACAATATTCAAAAGGAATCTACACTTCACTTGGTGTTACGTCTCCGAGGTGG 3783449 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| |||||||| |||||||| || || ||| || || || Sbjct 3785047 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACTATAACACTAGAAGTTGAGCCATCA 3785106 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| || ||||||||| | || || || Sbjct 3785107 GACACTATCGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAG 3785166 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212 || | ||||| ||||| ||||| || || |||||| | || ||| | | ||||||| Sbjct 3785167 CAGCGTCTTATTTTTGCTGGCAAGCAGTTAGAAGATGGACGAACACTTT--CTGATTACA 3785224 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||| ||||||||||| |||||| ||||||| || | ||||| || Sbjct 3785225 ATATTCAGAAGGAATCTACACTTCACTTGGTGTTGCGTCTCCGAGGTGG 3785273 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| |||||||| |||||||| || || ||| || || || Sbjct 3785503 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACTATAACACTAGAAGTTGAGCCATCA 3785562 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| || ||||||||| | || || || Sbjct 3785563 GACACTATCGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAG 3785622 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212 || | ||||| ||||| ||||| || || |||||| | || ||| | | ||||||| Sbjct 3785623 CAGCGTCTTATTTTTGCTGGCAAGCAGTTAGAAGATGGACGAACACTTT--CTGATTACA 3785680 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||| ||||||||||| |||||| ||||||| || | ||||| || Sbjct 3785681 ATATTCAGAAGGAATCTACACTTCACTTGGTGTTGCGTCTCCGAGGTGG 3785729 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| ||||| || ||||| |||||| ||| || || || Sbjct 3783451 ATGCAAATCTTTGTTAAAACCTTGACTGGAAAAACAATTACCCTTGAAGTAGAGCCATCA 3783510 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || || || || | || ||| || Sbjct 3783511 GACACTATCGAAAATGTGAAGGCTAAAATTCAAGACAAGGAGGGCATCCCACCAGACCAG 3783570 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212 || |||| |||||||| || || || ||||||||| | | ||||| ||||||||| Sbjct 3783571 CAGCGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGACGCACACTAT--CCGATTACA 3783628 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||| || |||||||| |||||| |||| |||| Sbjct 3783629 ATATTCAGAAAGAATCTACACTTCACTTGGTACTACG 3783665 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || |||| || ||||| ||||| ||| ||| || | Sbjct 3786186 AATGCAAATTTTTGTTAAGACTCTGACTGGAAAAACTATTACTTTAGAAGTGGAGCCTTC 3786245 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | || |||||| ||||| || ||| | || ||||| Sbjct 3786246 AGATACTATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAGGGTATCCCTCCTGATCA 3786305 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || ||||| || ||||| || |||||||| |||||| ||| | ||||||| || Sbjct 3786306 GCAGAGACTCATTTTTGCTGGGAAACAATTAGAAGATGGACGCACTCTTTCCGATTATAA 3786365 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||| || ||||||||||||||| | || || || | || |||||| Sbjct 3786366 TATTCAGAAAGAATCTACTCTTCACCTAGTATTGCGTCTCCGTGGAGGG 3786414 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| |||||||| |||||||| || || ||| || || || Sbjct 3783679 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACTATAACACTAGAAGTTGAGCCATCA 3783738 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| || |||||||| | || || || Sbjct 3783739 GATACTATCGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATCCCACCCGACCAG 3783798 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212 || | ||||| ||||| ||||| || || |||||| | || ||| | | ||||||| Sbjct 3783799 CAGCGTCTTATTTTTGCTGGCAAGCAGTTAGAAGATGGACGAACACTTT--CTGATTACA 3783856 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||| ||||||||||| |||||| |||| | || | ||||| || Sbjct 3783857 ATATTCAGAAGGAATCTACACTTCACTTGGTACTGCGTCTCCGAGGTGG 3783905 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| |||||||| |||||||| || || || ||| ||| | Sbjct 3785959 ATGCAAATTTTCGTCAAGACATTGACCGGCAAAACTATCACATTAGAGGTGGAGCCCTCG 3786018 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || |||||||| | ||| || || Sbjct 3786019 GATACTATTGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCCCCTGACCAG 3786078 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212 || || || || || || || ||||| | |||||| | | ||||| | || |||| Sbjct 3786079 CAGAGGCTAATATTCGCAGGTAAACAGCTAGAAGATGGACGCACACTAT--CTGACTACA 3786136 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | |||||||||||||| ||| | || | || |||||||| | ||||| Sbjct 3786137 ACATTCAAAAGGAATCCACTTTGCATTTAGTTTTACGATTGAGGGGAGG 3786185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| |||||||| || || || || ||| | Sbjct 3784819 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACTATCACACTTGAGGTTGAGCCCTCT 3784878 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||| ||||| || |||||||| | || || ||| Sbjct 3784879 GATACCATAGAAAACGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCTGACCAA 3784938 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTACA 25212 ||| || | || || || || || |||||||||||| | | ||||| ||||||||| Sbjct 3784939 CAACGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGACGCACACTAT--CCGATTACA 3784996 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||| || |||||||| |||||| ||||| | || | ||||| || Sbjct 3784997 ATATTCAGAAAGAATCTACACTTCACTTGGTGCTGCGTCTCCGAGGTGG 3785045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || || || ||| || | |||||||| ||||| || |||||| Sbjct 3784228 GACAAAGAAGGCATCCCTCCTGACCAGCAACGATTGATCTTTGCTGGCAAGCAGTTGGAA 3784287 Query 25188 GATT--CCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 ||| | || ||| | | |||||||||||||| ||||||||||| |||||| |||| Sbjct 3784288 GATGGACGAACACTTT--CTGATTACAATATTCAGAAGGAATCTACACTTCACTTGGTAC 3784345 Query 25246 TACGATTACGAGGAGG 25261 | || | ||||| || Sbjct 3784346 TGCGTCTCCGAGGTGG 3784361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410758034004602