Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5264 113 7e-20 >seq5264 Length=5978571 Score = 113 bits (124), Expect = 7e-20 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||| | || | |||||||||||| ||||||||||| |||||||| | | ||| Sbjct 3786398 AATACTAGGTGAAGAGTAGATTCTTTCTGAATATTATAATCGGAAAGAGTGCGTCCATCT 3786339 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 ||||||||||| ||||||||||| | ||| |||||||| ||||| || || || |||||| Sbjct 3786338 TCTAATTGTTTCCCAGCAAAAATGAGTCTCTGCTGATCAGGAGGGATACCCTCCTTATCT 3786279 Query 146186 TGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTT 146245 || |||||||||| || ||||||| || || ||| Sbjct 3786278 TGAATTTTGGCTTTAACATTTTCAATAGTATCTGAAGGCTCCACTTCTAAAGTAATAGTT 3786219 Query 146246 TTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || | || |||| || ||||||||| Sbjct 3786218 TTTCCAGTCAGAGTCTTAACAAAAATTTGCATT 3786186 Score = 107 bits (118), Expect = 3e-18 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | || |||||| ||||| | ||||||||||| ||||||||||| || Sbjct 3784133 CCGCCTCGCAATCGTAATACTAAATGAAGTGTAGATTCTTTCTGAATATTATAATCGGAT 3784074 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || || || || ||||| || ||||| | |||||| || |||||| Sbjct 3784073 AGTGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGA 3784014 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| || |||||| |||||| Sbjct 3784013 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACC 3783954 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||||||||| || || || || || | ||| |||||||| Sbjct 3783953 TCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 3783907 Score = 107 bits (118), Expect = 3e-18 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | || |||||| ||||| | ||||||||||| ||||||||||| || Sbjct 3784589 CCGCCTCGCAATCGTAATACTAAATGAAGTGTAGATTCTTTCTGAATATTATAATCGGAT 3784530 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || || || || ||||| || ||||| | |||||| || |||||| Sbjct 3784529 AGTGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGA 3784470 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| || |||||| |||||| Sbjct 3784469 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACC 3784410 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||||||||| || || || || || | ||| |||||||| Sbjct 3784409 TCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 3784363 Score = 105 bits (116), Expect = 1e-17 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||| |||| ||| ||||| ||| || |||||||| || ||||| || | | || Sbjct 3328350 AATACCAAGTGTAGAGTCGATTCCTTTTGA-ATATTATAGTCAGAAAGTGTGCGACCGTC 3328292 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || || || ||||||||||| |||| | |||||||| || ||||| |||||||| || Sbjct 3328291 TTCCAACTGCTTTCCAGCAAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCTTTGTC 3328232 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| ||||| ||| ||||||||| | || || || Sbjct 3328231 TTGGATTTTGGCTTTTACGTTTTCAATGGTATCGGAAGGTTCTACTTCCAAAGTAATGGT 3328172 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTA 146284 |||||| || ||||| |||| || || |||||||| ||| Sbjct 3328171 TTTACCCGTCAATGTCTTAACAAAAATCTGCATTTTGTTA 3328132 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | | |||||| || | |||||||| || ||||| ||||| ||| Sbjct 3783905 CCACCTCGGAGACGCAGTACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAA 3783846 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| ||||| || || ||||||||||| | | ||||| || || || Sbjct 3783845 AGTGTTCGTCCATCTTCTAACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGG 3783786 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||||||||| || ||| Sbjct 3783785 ATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCGATAGTATCTGATGGCTCAACT 3783726 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||||| || ||||| || || ||||| || | ||| |||||||| Sbjct 3783725 TCTAGTGTTATAGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 3783679 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | | ||||| || | ||||||||||| ||||| ||||| || Sbjct 3785045 CCACCTCGGAGACGCAGCACCAAGTGAAGTGTAGATTCTTTCTGAATATTGTAATCGGAT 3784986 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||| || ||||| |||||||||| ||| || || |||||| Sbjct 3784985 AGTGTGCGTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCGTTGTTGGTCAGGAGGA 3784926 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 3784925 ATGCCTTCTTTGTCTTG 3784909 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | |||||||| || ||||| ||||| ||| Sbjct 3785273 CCACCTCGGAGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAA 3785214 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| ||||| || || ||||||||||| | | ||||| || || || Sbjct 3785213 AGTGTTCGTCCATCTTCTAACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGG 3785154 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||| ||||| || ||| Sbjct 3785153 ATACCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCAACT 3785094 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||||| || ||||| || || ||||| || | ||| |||||||| Sbjct 3785093 TCTAGTGTTATAGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 3785047 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | || ||||| || | |||||||| || ||||| ||||| ||| Sbjct 3785729 CCACCTCGGAGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAA 3785670 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| ||||| || || ||||||||||| | | ||||| || || || Sbjct 3785669 AGTGTTCGTCCATCTTCTAACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGG 3785610 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||| ||||| || ||| Sbjct 3785609 ATACCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCAACT 3785550 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||||| || ||||| || || ||||| || | ||| |||||||| Sbjct 3785549 TCTAGTGTTATAGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 3785503 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| | ||||||||| || || |||||||| || || || |||||| Sbjct 3330189 CCACCACGGAGTCGGAGTACCAAATGCAAGGTGGATTCTTTTTGGATGTTGTAGTCTGAA 3330130 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||||| ||||||||||| | ||| || ||||| ||||| Sbjct 3330129 AGAGTACGTCCATCTTCCAGCTGTTTACCAGCAAAAATAAGTCTCTGTTGATCTGGAGGG 3330070 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || ||||| Sbjct 3330069 ATGCCCTCCTTGTCTTG 3330053 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| || || |||||||| || || || || || | ||| | | ||| ||| Sbjct 3329943 ACTAAATGCAACGTCGATTCTTTCTGAATGTTGTAGTCGGATAAAGTACGACCATCTTCT 3329884 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || ||||| ||||||||||| |||||||| || || ||||| ||||| || || Sbjct 3329883 AATTGCTTACCAGCGAAAATCAATCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTG 3329825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743454435938560