Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5264 131 1e-25 seq2594 93.3 3e-14 >seq5264 Length=5978571 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| || || || | ||| |||||||| |||||||||||||| Sbjct 3329050 TCCACCACGGAGACGCAGTACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGA 3328991 Query 34222 CA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || | || ||| | || |||||||| ||||| || || || | ||||||||||| || Sbjct 3328990 CAAGGTG-CGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGG 3328932 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || || ||||| |||||| ||| | || |||| | || | | ||| | Sbjct 3328931 GAATGCCTTCTTTGTCTTGGATCTTTGCCTTCACATTCTCTATGGTGTCTGAAGGTTCTA 3328872 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||||||||| || |||||||||||||||||||||||||| Sbjct 3328871 CTTCAAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATCTGCAT 3328823 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| || || || | ||| |||||||| |||||||||||||| Sbjct 3328594 TCCACCACGGAGACGCAGTACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGA 3328535 Query 34222 CA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || | || ||| | || |||||||| ||||| || || || | ||||||||||| || Sbjct 3328534 CAAGGTG-CGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGG 3328476 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || || ||||| |||||| ||| | || |||| | || | | ||| | Sbjct 3328475 GAATGCCTTCTTTGTCTTGGATCTTTGCCTTCACATTCTCTATGGTGTCTGAAGGTTCTA 3328416 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||||||||| || ||||| |||||||||||||||||||| Sbjct 3328415 CTTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATCTGCAT 3328367 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| |||||||||||||| | ||| | || || || ||||| || ||||| Sbjct 3329926 TTCTTTCTGAATGTTGTAGTCGGATAAAGTACGACCATCTTCTAATTGCTTACCAGCGAA 3329867 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | | |||||| || || | | ||| ||||| ||||||| ||||| || Sbjct 3329866 AATCAATCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGTATCTTTGCCTTTACATT 3329807 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 |||| | || | | ||| || || | |||||||| || || ||||||||||| || Sbjct 3329806 TTCTATGGTGTCAGAAGGTTCAACTTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTAAC 3329747 Query 34378 AAAGATCTGCAT 34389 |||||| ||||| Sbjct 3329746 AAAGATTTGCAT 3329735 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34180 CACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTC 34239 ||||| ||| | ||| ||| || || || ||||| ||||| | || | || || Sbjct 3783432 CACCAAGTGAAGTGTAGATTCCTTTTGAATATTGTAATCGGATAATGTGCGTCCATCTTC 3783373 Query 34240 CAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGC 34299 |||||||||||| ||||| || | |||||| ||||| ||| | || ||| || || Sbjct 3783372 CAACTGCTTGCCAGCGAAGATCAACCGCTGTTGGTCTGGGGGGATGCCCTCTTTATCTTG 3783313 Query 34300 TATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||||| |||| || | || | ||| | | ||| || |||| ||||||||||| Sbjct 3783312 GATCTTGGCTTTTACATTCTCAATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTT 3783253 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||| ||||| ||||||||||| Sbjct 3783252 TCCCGTCAAAGTCTTCACGAAGATCTGCAT 3783223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| || || || | |||| || ||||| |||||||||||||| Sbjct 3329734 TCCACCACGGAGACGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 3329675 Query 34222 CA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || | || ||| | || ||||| || || || || ||||| | |||||||||||| || Sbjct 3329674 CAAGGTG-CGGCCATCTTCCAATTGTTTACCAGCAAAAATCAACCGCTGCTGGTCTGGGG 3329616 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | |||||||| ||||| ||| | || | || | || | | || | Sbjct 3329615 GAATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATGGTGTCAGAAGGCTCAA 3329556 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || ||||| || || || || |||||||| || || ||||| Sbjct 3329555 CTTCCAGAGTAATGGTCTTACCAGTAAGGGTTTTCACGAAAATTTGCAT 3329507 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || ||||||||||| || || ||| | || |||| ||| || || || || Sbjct 3330154 TTCTTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCATCTTCCAGCTGTTTACCAGCAAA 3330095 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| || | ||| || || || | || ||||||||| || ||||||||| | || Sbjct 3330094 AATAAGTCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCTTGAAT-TTTTGCTTTGACAT 3330036 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | |||||| |||| || |||||||| || || || ||||| | Sbjct 3330035 TTTCAATTGTGTCAGATGGTTCGACCTCCAAAGTAATGGTTTTACCAGTCAGGGTTTTAA 3329976 Query 34377 CAAAGATCTGCAT 34389 |||| |||||||| Sbjct 3329975 CAAATATCTGCAT 3329963 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||| ||| | ||| ||| ||||| || ||||| || || Sbjct 3784361 CCACCTCGGAGACGCAGTACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAA 3784302 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| || || || | || |||||||| || Sbjct 3784301 AGTGTTCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 3784242 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| |||| || | || | ||| | | ||||| Sbjct 3784241 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTCTCAATAGTATCAGATGGCTCGACC 3784182 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || ||||| ||||| | |||||| ||||| |||||||| Sbjct 3784181 TCCAACGTAATAGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 3784135 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| || | |||| || ||||| ||||| ||||| || Sbjct 3329278 TCCACCACGGAGACGCAAAACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGA 3329219 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| | || || | || || || ||||| || | ||||||||||| ||| Sbjct 3329218 CAAGGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 3329159 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| ||||| || ||| ||| | || |||| | ||| | | ||| || Sbjct 3329158 GATTCCCTCTTTGTCCTGGATTTTTGCCTTCACATTTTCTATGGTATCAGAAGGTTCCAC 3329099 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || || |||||||| ||||||||||| Sbjct 3329098 TTCAAGGGTGATTGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 3329051 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | ||| ||||||||| || || || ||||| Sbjct 3785501 CCACCTCGGAGACGCAGCACCAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCGGAT 3785442 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||||||||| || ||||| || | |||||||||||| || Sbjct 3785441 AGTGTGCGTCCATCTTCCAACTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGAGGA 3785382 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || ||| ||| | | | || | || | | ||| || Sbjct 3785381 ATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACC 3785322 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| |||||||| || | ||| || || || || ||||| Sbjct 3785321 TCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAAATTTGCAT 3785275 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | ||| ||||||||| || || || ||||| Sbjct 3785957 CCACCTCGGAGACGCAGCACCAAGTGAAGGGTAGATTCTTTCTGAATATTATAATCGGAT 3785898 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||||||||| || ||||| || | |||||||||||| || Sbjct 3785897 AGTGTGCGTCCATCTTCCAACTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGAGGA 3785838 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || ||| ||| | | | || | || | | ||| || Sbjct 3785837 ATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACC 3785778 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| |||||||| || | ||| || || || || ||||| Sbjct 3785777 TCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAAATTTGCAT 3785731 >seq2594 Length=7326867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||||| ||||| ||| || || ||| ||||| || || ||||| ||| Sbjct 5011870 CCTCCTCTCAACCTCAACACCAAGTGCAAGGTGGATTCCTTCTGAATATTATAGTCTGAC 5011929 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || |||||||| ||||| || || || || ||||||||||| || Sbjct 5011930 AAAGTGCGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGTGGA 5011989 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || || ||| ||||| | || | || | |||| | |||||| Sbjct 5011990 ATACCTTCCTTATCCTGAAT-TTTGGCTTTAACATTTTCGATAGTGTCGGAAGCTTCGAC 5012048 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || ||||| || ||||||||||| Sbjct 5012049 CTCAAGGGTGATGGTCTTCCCTGTTAGCGTTTTTACGAAGATCTGCAT 5012096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323041512402080