Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq381 116 3e-21 seq557 113 4e-20 seq5264 100 2e-16 seq2594 98.7 8e-16 >seq381 Length=8194978 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 12885 GAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTTTGTCGCCGGAAACC 12944 ||||| | || || || || |||| || |||||||| | ||| | ||||| ||| Sbjct 1460515 GAAGATGAACGCTTAAAAACATTTGTTAACTGGCCTGTACCATTTCTTTCGCCACAAAAA 1460456 Query 12945 ATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGCGTTGTGCGTTTTGT 13004 | |||| ||| || |||||||| ||||| | | ||||| ||| | ||||| ||||| Sbjct 1460455 CTAGCTAGAAACGGTTTTTACTATTTGGGGAAAAATGACGAAGTGAGATGTGCTTTTTGC 1460396 Query 13005 AAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCGACCATAAGAAGTGG 13064 ||||||||||| ||||| |||| ||||||||| ||||| || || ||| || ||| Sbjct 1460395 AAAGTGGAGATTATGCGGTGGATGGAGGGCGACGATCCAGCCAAAGATCATCAGCGATGG 1460336 Query 13065 GCTCCCCAATGTCC 13078 || || || ||||| Sbjct 1460335 GCGCCACAGTGTCC 1460322 >seq557 Length=1183051 Score = 113 bits (124), Expect = 4e-20 Identities = 200/289 (69%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 7048 CATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGTACGCCTCCACACCCTTTTGTGG 7107 ||||| ||||||||| || ||||| || ||||||| | | || ||||| ||||| Sbjct 1026680 CATCAACTGGCCAAAGTTGCCCTTGTATGGCTCGTTCCATGAAGACAATCCCTTCTGTGG 1026739 Query 7108 TTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTTGAAATCGTCTCGGCCCGCGCA 7167 |||||| | || |||| ||| || || ||| ||||| || |||||||| ||| Sbjct 1026740 TTTCTGGAGAGCTGCCCATGGATCATGGATGGACACCTTGAAGTCCTCTCGGCCGCTGCA 1026799 Query 7168 CGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGTTTCAAGGCGTCGTTGAGTCCGT 7226 ||||| ||||| |||| |||| || | | | ||||| |||||||| || | Sbjct 1026800 CGATCGCTGCAAAGCTTGGAAACTGCCTTCG-ATTTCCTTCAAACTGTCGTTGATGCCAT 1026858 Query 7227 CTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCTGAGATTGGGCACGGGCACCT 7286 | || |||||||| || | || ||||||||||||||| | | |||||| | ||||| Sbjct 1026859 CGCCTCCGCAAATTGGGATGAAGCCGTACAGCAAATGGGTTAAATTGGGAATAGGCACGC 1026918 Query 7287 TGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCCACAAAGTACGC 7335 |||| | || || | | || || ||||| || || || ||||| Sbjct 1026919 GGTCTACCGGGAATTTTCTAGGATAGACGCCCCATTCGACGAAATACGC 1026967 >seq5264 Length=5978571 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| | || |||| |||||| || || || Sbjct 3329698 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAATTGTTTACCAGCAAA 3329639 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||||||| ||||| || || | ||| ||||||||| || || ||| || Sbjct 3329638 AATCAACCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTCGCCTTCACATT 3329579 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| || |||| ||||| ||||| || || || || ||||| Sbjct 3329578 TTCAATGGTGTCAGAAGGCTCAACTTCCAGAGTAATGGTCTTACCAGTAAGGGTTTTCAC 3329519 Query 45325 AAAGATTTGCATG 45337 || ||||||||| Sbjct 3329518 GAAAATTTGCATG 3329506 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || || ||||||||| ||||| ||||| || || | || Sbjct 3329262 AAAACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGACAAGGTACGGCCATCT 3329203 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||||||||||||||| ||||| ||||| ||||| || || | ||||| |||||| Sbjct 3329202 TCAAGTTGTTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCTTTGTCC 3329143 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | | | || | ||||| || | ||| || || Sbjct 3329142 TGGATTTTTGCCTTCACATTTTCTATGGTATCAGAAGGTTCCACTTCAAGGGTGATTGTT 3329083 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || ||||| ||||| ||||| Sbjct 3329082 TTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 3329051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| ||||| |||||| || || || || || |||||||| || || ||| Sbjct 3784133 CCGCCTCGCAATCGTAATACTAAATGAAGTGTAGATTCTTTCTGAATATTATAATCGGAT 3784074 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || |||| || || || ||||| ||||| || || ||||| ||||| Sbjct 3784073 AGTGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGA 3784014 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||||| ||| || | | | |||| | || ||| Sbjct 3784013 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACC 3783954 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || ||||| |||| |||||| || ||||||||||| Sbjct 3783953 TCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 3783907 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| ||||| |||||| || || || || || |||||||| || || ||| Sbjct 3784589 CCGCCTCGCAATCGTAATACTAAATGAAGTGTAGATTCTTTCTGAATATTATAATCGGAT 3784530 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || |||| || || || ||||| ||||| || || ||||| ||||| Sbjct 3784529 AGTGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGA 3784470 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||||| ||| || | | | |||| | || ||| Sbjct 3784469 ATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACC 3784410 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || ||||| |||| |||||| || ||||||||||| Sbjct 3784409 TCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 3784363 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || || |||||||| || || ||| ||| ||| | || ||| Sbjct 3785483 ACCAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCGGATAGTGTGCGTCCATCTTCC 3785424 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| ||||||||||| ||||| ||||| | || |||||||| Sbjct 3785423 AACTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGG 3785364 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| ||| || | | | |||| | || ||||| | || || || ||| Sbjct 3785363 ATTTTTGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACCTCAAGTGTGATTGTTTTG 3785304 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| || || |||||||| Sbjct 3785303 CCAGTCAAAGTCTTGACGAAAATTTGCAT 3785275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || || |||||||| || || ||| ||| ||| | || ||| Sbjct 3785939 ACCAAGTGAAGGGTAGATTCTTTCTGAATATTATAATCGGATAGTGTGCGTCCATCTTCC 3785880 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| ||||||||||| ||||| ||||| | || |||||||| Sbjct 3785879 AACTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGG 3785820 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| ||| || | | | |||| | || ||||| | || || || ||| Sbjct 3785819 ATTTTTGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACCTCAAGTGTGATTGTTTTG 3785760 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| || || |||||||| Sbjct 3785759 CCAGTCAAAGTCTTGACGAAAATTTGCAT 3785731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG-- 45166 |||||||| ||| | | || || |||| ||| || |||||||||||||||||| Sbjct 3329962 GCCACCTCGCAAGCGAAGAACTAAATGCAACGTCGATTCTTTCTGAATGTTGTAGTCGGA 3329903 Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | ||| ||| | || || | ||| || || ||||| ||||| | ||| || || || Sbjct 3329902 TAAAGT--ACGACCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGATCTGGT 3329845 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||||| |||||| || ||| ||| || | | | |||| | || Sbjct 3329844 GGGATTCCCTCTTTGTCCTGTATCTTTGCCTTTACATTTTCTATGGTGTCAGAAGGTTCA 3329785 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | ||| || ||||| || || ||||| || |||||||||||||| Sbjct 3329784 ACTTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTAACAAAGATTTGCAT 3329735 >seq2594 Length=7326867 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| || || |||||||||| ||| ||||||||||| || ||||| | Sbjct 5011870 CCTCCTCTCAACCTCAACACCAAGTGCAAGGTGGATTCCTTCTGAATATTATAGTCTGAC 5011929 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || |||| ||||| ||||| || |||| ||||| ||||| || || Sbjct 5011930 AAAGTGCGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGTGGA 5011989 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| ||| |||||| ||||| | | |||| | | || ||| Sbjct 5011990 ATACCTTCCTTATCCTGAATTTTGGCTTTAACATTTTCGATAGTGTCGGAAGCTTCGACC 5012049 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || || || || || ||||| ||||| Sbjct 5012050 TCAAGGGTGATGGTCTTCCCTGTTAGCGTTTTTACGAAGATCTGCAT 5012096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395037917617603