Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq142 116 4e-21 >seq142 Length=7807734 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 ||| ||||||| | | | ||||| | | | |||||||| ||||| ||||| || Sbjct 5994398 ATTCAATAAATCTCACCTTTCTTTTGGATCTCTGATGTATGTGTCAATTAGTAATGAGTA 5994339 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 ||||||||| |||| ||||||||||| || || || ||||| ||| |||| ||||| | Sbjct 5994338 CATTTCAGAATGTACATTTTCCATAGCAATTTGGAACCCATAGAAAAATCTGGCTTCAGT 5994279 Query 14560 CCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 | ||| |||| ||| | | || ||||| | | ||||||||| ||||| ||||| | Sbjct 5994278 CACTTGGACCTCCTGTG-AGAACCTTTCTACAAGATTTTCATTGACTATTCCATCTGATG 5994220 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAA 14649 | || || |||||||| | | |||||||| Sbjct 5994219 CAGCGAAGAATGCCAAAACATGCTTAATAAA 5994189 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||| ||| ||||||||| || ||||| | ||| ||||| | ||||| || | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| || || | ||| || || |||||||| || || ||||||||||| || | Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | | ||||| ||||| | ||| | ||| | | ||||| | | |||||| |||| Sbjct 5994892 CGACGATACGTTCACCAAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTCAG 5994833 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 || ||||| | | | || || ||||| || || ||||| Sbjct 5994832 CCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAATAA 5994790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482298914975240