Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq557 295 5e-75 seq381 123 2e-23 seq5264 107 1e-18 seq2594 82.4 6e-11 >seq557 Length=1183051 Score = 295 bits (326), Expect = 5e-75 Identities = 644/959 (67%), Gaps = 9/959 (1%) Strand=Plus/Plus Query 90991 TAGTCAACGACTCCATCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAAA 91050 || ||||| || || |||| ||||| ||| | || || | |||| ||| ||| Sbjct 1026015 TAATCAACTACGCCGTCTTGCCACGAACCCTTGCAAGGCCCTGTGGCGATCCCAGTGAAA 1026074 Query 91051 TAGTTATCACCTTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCA 91110 |||||||| |||| | || || ||||| || | || ||||| || ||||| Sbjct 1026075 GGATTATCACCCGTGTAGTTCTGGACACCGGTCCATCCTCTGCCATACATAGCTACACCT 1026134 Query 91111 ATAATTATTTTACTAGAATCAACACCTTGTTTTGTGAGCATTTGCACGGCATGATGCGTG 91170 | || || || | ||| |||||||| | || | || || | || || Sbjct 1026135 ACAACAATCTTCTTCGAACTCACACCTTGAGCTAACAGGAATTTAACACCGAAATCTGTC 1026194 Query 91171 GTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAATCG 91230 ||||| ||| || || ||||| || ||||| | | ||| |||| ||||||| | Sbjct 1026195 GTGTAAGTCTCCTTTGGCCTCCATGAAGGCGCGTACAAAGACGTCTGATGGCCCAAAGTG 1026254 Query 91231 GTATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAACTTT 91290 |||||||| |||||||| || ||||| |||||| |||| | || | || Sbjct 1026255 TCGTTTGACCAGGCTCCTTTGAAGTCGTAGCTCATGAAGAATATATGGTCCATGTATTTC 1026314 Query 91291 TGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTC 91350 || || ||| || | || | || ||| || || |||| || | ||| ||| ||| Sbjct 1026315 TGAGCTTCGTTGTAGTTCACCACTTGGATTTTATCCCAACCTGCGCTGATAGCGGAAGTC 1026374 Query 91351 AATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCTTTT 91410 | ||||| || || |||| ||| || || | | ||| ||||| | || || Sbjct 1026375 AGCTCGTATTTCTTTCCAGTTTCAGCTGATAACTCGTTGAGCATCTCACGGAGTTCCTTC 1026434 Query 91411 AGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCT 91470 | || | | ||| | || |||| ||| ||| ||| | | |||||||||||| Sbjct 1026435 ATCAGACTTACGTACACATCACCGTC---TTTGGGACTGCCGAGGTTGGGATTAGCGCCT 1026491 Query 91471 TTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAA 91530 |||||||| || ||||||||||| ||||| ||||| ||||| |||||||| || || | Sbjct 1026492 TTACCGCCAGGGAATTCCCAATCGATATCAACACCATCAAAGAATTTCCAGGTTTCCAGA 1026551 Query 91531 AATTCTTTAACCGAATCAACGAAC--ACGTTTCTTCG-TTTGACATCGTGCATAAAATAG 91587 || |||||||| ||| | || ||| | | |||| | |||| || ||| | || | || Sbjct 1026552 AAATCTTTAACTGAAGCTACAAACCGATCTCTCTTAGATTTGTCA--GTGAAGAAGA-AG 1026608 Query 91588 AACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGGCC 91647 || || || | ||||||||| |||||||| || || || | ||| | | || || || Sbjct 1026609 AATGGATCAGCCAAAGTCCATCCACCGATAGATGGCAAGATTTTCAGGTCAGGCTTAGCT 1026668 Query 91648 AACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACA 91707 || ||| | ||| ||||||||||||||||| ||||||||||| | || | Sbjct 1026669 TGTTTCAACATCATCAACTGGCCAAAGTTGCCCTTGTATGGCTCGTTCCATGAAGACAAT 1026728 Query 91708 CCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCG 91767 || || |||||||| || | |||||||| ||||| || ||||| || || || || || Sbjct 1026729 CCCTTCTGTGGTTTCTGGAGAGCTGCCCATGGATCATGGATGGACACCTTGAAGTCCTCT 1026788 Query 91768 CGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCATCG 91827 || || |||||||||| |||||| || ||||| || ||| || | ||| Sbjct 1026789 CGGCCGCTGCACGATCGCTGCAAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCG 1026848 Query 91828 TTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAATTTGGC 91887 || | ||||||||||||||||| || || || ||||||| || ||||| ||||| || Sbjct 1026849 TTGATGCCATCGCCTCCGCAAATTGGGATGAAGCCGTACAGCAAATGGGTTAAATTGGGA 1026908 Query 91888 AGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTACGC 91946 | ||||| ||| | || || || | || ||||||||||| || || ||||| Sbjct 1026909 ATAGGCACGCGGTCTACCGGGAATTTTCTAGGATAGACGCCCCATTCGACGAAATACGC 1026967 >seq381 Length=8194978 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 20402 TTGCGTATTAAAGGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGTCGCCT 20461 || |||| | |||||| || || |||||| || |||||||| || || |||||||| Sbjct 1460310 TTACGTAACAGAGGACACTGTGGCGCCCATCGCTGATGATCTTTGGCTGGATCGTCGCCC 1460369 Query 20462 TCTTGCCAATGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGCGCCCC 20521 || ||| ||||||| |||||||||||||| ||||| | |||||||||| |||| Sbjct 1460370 TCCATCCACCGCATAATCTCCACTTTGCAAAAAGCACATCTCACTTCGTCATTTTTCCCC 1460429 Query 20522 AAATAATAGAACCCGTTGGTCGCCATTTGCTCAGGTGTTAAAAATGTTACGGGCCAGTTT 20581 ||||| || || ||||| | || | || | || | | ||||| ||| |||||||| Sbjct 1460430 AAATAGTAAAAACCGTTTCTAGCTAGTTTTTGTGGCGAAAGAAATGGTACAGGCCAGTTA 1460489 Query 20582 ACAAAAGTGGTTAAACGTACGGCTTC 20607 ||||| || |||| ||| | |||| Sbjct 1460490 ACAAATGTTTTTAAGCGTTCATCTTC 1460515 >seq5264 Length=5978571 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||||||| || | || ||||||||||| ||||||||||| | Sbjct 3330189 CCACCACGGAGTCGGAGTACCAAATGCAAGGTGGATTCTTTTTGGATGTTGTAGTCTGAA 3330130 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| ||||| || ||| | |||||||| |||||||| || Sbjct 3330129 AGAGTACGTCCATCTTCCAGCTGTTTACCAGCAAAAATAAGTCTCTGTTGATCTGGAGGG 3330070 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||||| |||| ||||| | | ||| |||||| || ||| Sbjct 3330069 ATGCCCTCCTTGTCTTGAATTT-TTGCTTTGACATTTTCAATTGTGTCAGATGGTTCGAC 3330011 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| |||| || |||| ||||| ||||| || ||||| Sbjct 3330010 CTCCAAAGTAATGGTTTTACCAGTCAGGGTTTTAACAAATATCTGCAT 3329963 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||||||| |||||||| ||||| ||||| |||| | ||| | |||| Sbjct 3785030 AGCACCAAGTGAAGTGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCATCT 3784971 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || || | || | || |||||| || || | |||||| || || Sbjct 3784970 TCCAATTGCTTACCAGCGAAAATCAATCGTTGTTGGTCAGGAGGAATGCCTTCTTTGTCT 3784911 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | | | || ||| |||||| |||| ||||| || Sbjct 3784910 TGGATTTTAGCCTTTACGTTTTCTATGGTATCAGAGGGCTCAACCTCAAGTGTGATAGTT 3784851 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || |||||||| ||||| Sbjct 3784850 TTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 3784819 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | | ||| | |||||| || |||||||| ||||| || || |||| Sbjct 3786413 CCTCCACGGAGACGCAATACTAGGTGAAGAGTAGATTCTTTCTGAATATTATAATCGGAA 3786354 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| |||||||| || ||| | || ||||| || ||||| || Sbjct 3786353 AGAGTGCGTCCATCTTCTAATTGTTTCCCAGCAAAAATGAGTCTCTGCTGATCAGGAGGG 3786294 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| ||||| | |||| | | | | ||| ||| || ||||| Sbjct 3786293 ATACCCTCCTTATCTTGAATTT-TGGCTTTAACATTTTCAATAGTATCTGAAGGCTCCAC 3786235 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || || |||| || |||| || || ||||||||||||||| Sbjct 3786234 TTCTAAAGTAATAGTTTTTCCAGTCAGAGTCTTAACAAAAATTTGCATT 3786186 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||||||||||||||| | | ||| | |||||| | ||||| || Sbjct 3786155 GTGGATTCCTTTTGAATGTTGTAGTCAGATAGTGTGCGTCCATCTTCTAGCTGTTTACCT 3786096 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || | || || || || || || ||| | |||||| || || ||||| ||| Sbjct 3786095 GCGAATATTAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGAATTTTAGCCTTC 3786036 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| ||| || |||||| || | ||||| |||||||||||||||| Sbjct 3786035 ACATTTTCAATAGTATCCGAGGGCTCCACCTCTAATGTGATAGTTTTGCCGGTCAATGTC 3785976 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 3785975 TTGACGAAAATTTGCAT 3785959 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||||| || ||||| || ||||| || ||||| | | || | |||| Sbjct 3329490 AGTACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAGAGAGGGTGCGTCCATCT 3329431 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||| || ||| |||| | | || ||||| ||| | ||||||||||| Sbjct 3329430 TCCAGTTGTTTACCAGCAAAGATTAAACGCTGCTGATCTGGGGGGATACCTTCCTTATCC 3329371 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | ||| |||||| || || ||| | || ||| | Sbjct 3329370 TGGATTT-TAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCTACTTCCAAGGGTATGGT 3329312 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| ||||| | |||||| ||||| || |||||| Sbjct 3329311 TTTTCCGGTGAGTGTTTTGACAAAGATCTGCATT 3329278 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||||||| |||||||| ||||| || || |||| | ||| | |||| Sbjct 3785486 AGCACCAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCGGATAGTGTGCGTCCATCT 3785427 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| || || || || |||| | | || || || || | ||||||||| || Sbjct 3785426 TCCAACTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCT 3785367 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| | ||| || | | ||| ||||| || || |||| ||||| || Sbjct 3785366 TGGATTTTTGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACCTCAAGTGTGATTGTT 3785307 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || || ||||||||||| Sbjct 3785306 TTGCCAGTCAAAGTCTTGACGAAAATTTGCAT 3785275 >seq2594 Length=7326867 Score = 82.4 bits (90), Expect = 6e-11 Identities = 179/263 (68%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 18065 ATaaaaaattaaaaaTACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTG 18124 ||| || | |||||||| | | ||| |||| ||||| | | || | |||| ||| Sbjct 5011839 ATAGAATAGTAAAAATA--TCTAAATTTAGTTA-CCTCCTCTCAACCTCAACACCAAGTG 5011895 Query 18125 AAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTT 18184 | || ||||| || ||||| || ||||| | || || | ||||||||| ||||| Sbjct 5011896 CAAGGTGGATTCCTTCTGAATATTATAGTCTGACAAAGTGCGGCCATCTTCCAACTGTTT 5011955 Query 18185 GCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTG 18244 ||| ||| |||| |||| || || || || | ||||||||||| ||||| | | Sbjct 5011956 GCCGGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGAATTT-TGG 5012014 Query 18245 C-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCA 18303 | || || | | | | |||||| | ||| |||| ||||||| | || || || | Sbjct 5012015 CTTTAACATTTTCGATAGTGTCGGAAGCTTCGACCTCAAGGGTGATGGTCTTCCCTGTTA 5012074 Query 18304 ATGTTTTTACAAAAATTTGCATT 18326 |||||||| || || |||||| Sbjct 5012075 GCGTTTTTACGAAGATCTGCATT 5012097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379308202136535