Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq557 203 3e-47 seq5264 89.7 4e-13 >seq557 Length=1183051 Score = 203 bits (224), Expect = 3e-47 Identities = 638/977 (65%), Gaps = 15/977 (2%) Strand=Plus/Plus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||| | ||||| || || ||||||| || ||| | |||| || || || | Sbjct 1026000 TTTGCAATATCCCTGTAATCAACTACGCCGTCTTGCCACGAACCCTTGCAAGGCCCTGTG 1026059 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 || | ||| |||| ||||| |||| ||||||| ||||| || ||||| || | ||| Sbjct 1026060 GCGATCCCAGTGAAAGGATTATCACCCGTGTAGTTCTGGACACCGGTCCATCCTCTGCCA 1026119 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| ||||| || | || | || || | | |||| | ||| || | || | Sbjct 1026120 TACATAGCTACACCTACAACAATCTTCTTCGAACTCACACCTTGAGCTAACAGGAATTTA 1026179 Query 36053 ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTC 36112 || | | | | ||||| | || || || |||| | | |||||| | |||| Sbjct 1026180 ACACCGAAATCTGTCGTGTAAGTCTCCTTTGGCCTCCATGAAGGCGCGTACAAAGACGTC 1026239 Query 36113 TGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATT 36172 ||||| || | | | || ||||| ||||||||||| || || ||||| | ||| || Sbjct 1026240 TGATGGCCCAAAGTGTCGTTTGACCAGGCTCCTTTGAAGTCGTAGCTCATGAAGAATATA 1026299 Query 36173 TTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCG 36232 | || | || | || ||| || ||| || ||| | ||| || || || ||| Sbjct 1026300 TGGTCCATGTATTTCTGAGCTTCGTTGTAGTTCACCACTTGGATTTTATCCCAACCTGCG 1026359 Query 36233 CTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGTTTGTATTTGA--ACTTGATCGAGCA 36290 || || || | || || || | | | | | || | ||| ||| | | ||||| Sbjct 1026360 CTGATAGCGGAAGTCAGCTCGTATTT-CTTTCCAGTTTCAGCTGATAACTCGTT-GAGCA 1026417 Query 36291 TGGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGTTCCACATCGCCAA 36350 | | || | ||| || | | | ||| | | ||| || | ||| | Sbjct 1026418 TCTCACGGAGTTCCTTCATCAGACTTACGTACACATCACCGTC---TTTGGGACTGCCGA 1026474 Query 36351 CGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAA 36410 ||| ||||| |||||||| ||||| || ||||||||||| ||||| | || || || | Sbjct 1026475 GGTTGGGATTAGCGCCTTTACCGCCAGGGAATTCCCAATCGATATCAACACCATCAAAGA 1026534 Query 36411 ATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCAT 36470 ||||||| || || ||| || || || | ||||| | || | | | Sbjct 1026535 ATTTCCAGGTTTCCAGAAAATCTTTAACTGAAGCTACAAACCGATCTCTCTTAGATTTGT 1026594 Query 36471 C-GTGCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTT 36529 | ||| | | || |||| ||||| | || ||||| || ||||| |||| ||| | ||| Sbjct 1026595 CAGTGAAGAAGA-AGAATGGATCAGCCAAAGTCCATCCACCGATAGATGGCAAGATTTTC 1026653 Query 36530 AGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCG 36589 || | || || || ||| ||| || || ||||| ||||| ||||| || ||| Sbjct 1026654 AGGTCAGGCTTAGCTTGTTTCAACATCATCAACTGGCCAAAGTTGCCCTTGTATGGCTCG 1026713 Query 36590 TTCCATGC-GCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGA 36648 ||||||| | || ||| | |||||||| ||||| || ||||| ||||| || ||||| Sbjct 1026714 TTCCATGAAGACAATCCCT-TCTGTGGTTTCTGGAGAGCTGCCCATGGATCATGGATGGA 1026772 Query 36649 AACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGAT 36708 || || || | || | ||| |||||||| ||||| |||| ||||| || ||| Sbjct 1026773 CACCTTGAAGTCCTCTCGGCCGCTGCACGATCGCTGCAAAGCTTGGAAACTGCCTTCGAT 1026832 Query 36709 AGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGTATA--AA 36766 || ||||||||||| || || || || |||||||| || || || ||||| | || Sbjct 1026833 TTCCTTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGGATGAAGCCGTACAGCAA 1026892 Query 36767 ATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAACGCCC 36826 ||| | ||| || || | ||||| ||| || || || || | || |||||| Sbjct 1026893 ATGGGTTAAA--TTGGGAATAGGCACGCGGTCTACCGGGAATTTTCTAGGATAGACGCCC 1026950 Query 36827 CATTCGACAAAATAGGC 36843 |||||||| ||||| || Sbjct 1026951 CATTCGACGAAATACGC 1026967 >seq5264 Length=5978571 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || || || || || |||||||| || || | || || ||| | Sbjct 3783907 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACAATCACACTTGAGGTAGAACCTTCA 3783966 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| || |||| ||||| | || |||||| | || |||||| Sbjct 3783967 GACACCATTGAAAACGTGAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCAGACCAG 3784026 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 |||||||| || | || ||||| || |||||||| | ||||| |||||| | Sbjct 3784027 CAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACACTAT--CCGATTATA 3784084 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || |||||||| | || ||||||||||| ||||||||||| || ||| Sbjct 3784085 ATATTCAGAAAGAATCTACACTTCATTTAGTATTACGATTGCGAGGCGGT 3784134 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || || || || || |||||||| || || | || || ||| | Sbjct 3784363 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACAATCACACTTGAGGTAGAACCTTCA 3784422 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| || |||| ||||| | || |||||| | || |||||| Sbjct 3784423 GACACCATTGAAAACGTGAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCAGACCAG 3784482 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 |||||||| || | || ||||| || |||||||| | ||||| |||||| | Sbjct 3784483 CAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACACTAT--CCGATTATA 3784540 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || |||||||| | || ||||||||||| ||||||||||| || ||| Sbjct 3784541 ATATTCAGAAAGAATCTACACTTCATTTAGTATTACGATTGCGAGGCGGT 3784590 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || || || || ||||||||||| || || | || || || | Sbjct 3785959 ATGCAAATTTTCGTCAAGACATTGACCGGCAAAACTATCACATTAGAGGTGGAGCCCTCG 3786018 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| |||| |||||| | ||||||||| | || ||||||| Sbjct 3786019 GATACTATTGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCCCCTGACCAG 3786078 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 || | |||||| || || ||||| || |||||| | ||||| || |||| Sbjct 3786079 CAGAGGCTAATATTCGCAGGTAAACAGCTAGAAGATGGACGCACACTAT--CTGACTACA 3786136 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| || || || |||| | |||||||| ||||||||| | ||||| Sbjct 3786137 ACATTCAAAAGGAATCCACTTTGCATTTAGTTTTACGATTGAGGGGAGG 3786185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418264525566560