Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2594 100 6e-16 seq142 87.8 4e-12 >seq2594 Length=7326867 Score = 100 bits (110), Expect = 6e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 94165 TTCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCA 94224 ||||||||| | || | || || || ||||||||||||||||| ||||| || | | Sbjct 140762 TTCACAAACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGAT 140703 Query 94225 CTGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGG 94284 |||||| |||||||| || ||||| || |||| || |||| | ||||| || Sbjct 140702 GTGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGA 140643 Query 94285 TTAGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337 ||| ||||||||| || ||||||| | || ||| ||||| |||||||| Sbjct 140642 TTACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTC 140590 >seq142 Length=7807734 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 5/141 (4%) Strand=Plus/Plus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA- 101959 |||||| | ||| || || ||||| |||||||||||||| ||||||||| | | ||| Sbjct 5994873 ATTTGGTG-AACGTATCGTCGCCTTCGCTGCAGTTGAAGGCATCTTCTTT--TCGGGCAG 5994929 Query 101960 -TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAA 102018 || || ||||| |||||| | ||||| || || | ||||||| || || | | ||| Sbjct 5994930 TTTTGCTTCCATCTTCTGGCTGAAGAAGAGAGGACTCATGCCTGGACTTACATTCAGCAA 5994989 Query 102019 TGAGTTCATTTCTAGGGACGA 102039 ||| | ||||||||||| || Sbjct 5994990 TGAACTTATTTCTAGGGATGA 5995010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989485826154565