Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2594 506 3e-138 seq142 109 7e-19 >seq2594 Length=7326867 Score = 506 bits (560), Expect = 3e-138 Identities = 1185/1766 (67%), Gaps = 50/1766 (3%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| ||||||| ||| |||||||| || || | ||| | ||||| | |||||| Sbjct 141626 GCAGGTTTAGTACGTAAATAATACATTCCAGTCTTCAAACCCATTTTCCATGCATAAAAA 141567 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| ||| | |||| ||| | || | || | ||| ||||| | || || || Sbjct 141566 TGTATAGACGTCAATTTGCCGTAATTAGGGGCAGCCACATGTATATTGAATGACTGGCTC 141507 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || || ||||| || ||||| ||||||| || | || || || ||| ||| Sbjct 141506 TGATCTATAAATGCTCCTCTATCTGCGGCCATTTGAATAGTTGTTTTGACTGAAATCTCC 141447 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGA 62302 || | ||||||||| || || || | | |||| |||| | |||| || || || Sbjct 141446 CAGACAGTTTTATACAAGTCCCTGATT-TCTTTAGGAATAGCCTCAATATTTTGTATAGA 141388 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| || ||||| || || || || |||| ||| || | | || ||||| Sbjct 141387 TCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATCCCACAAATCTGCTTCTGTTAA 141328 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | | | | | ||| | || || ||||| ||||||||||||| ||||| | ||| Sbjct 141327 ATCCCGCAACAAATGATGATTTACCACTTGAAATTCTCCAGACAGTACTCGTCTTTGGTA 141268 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 ||||||| || | || || | || ||||| || || | ||||||||||| || || Sbjct 141267 AATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTGAGCAGTGGAAGC 141208 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62540 ||| |||||||| || | | | ||| | || || ||||| | ||||| || Sbjct 141207 AGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCC--ATGTTTGGCAATTTTTTCC 141150 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNNNNNNATA 62593 |||| || ||||| ||||||||| | || | | ||| ||| Sbjct 141149 TTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTTCCACATCTC-------ATA 141097 Query 62594 TTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCT 62652 |||| ||||| | ||| | | || | ||| |||| || |||||| || | || | Sbjct 141096 CTGTAATATACCTTGACTAACAGGACTA-CCTTCATAAGTTTCATATACACCATATTTTT 141038 Query 62653 CAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTAT 62712 | || | || ||||| || ||||| ||||| |||||||| |||||||| || | | || Sbjct 141037 CTGCCAATTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATATTTGTTGAT 140978 Query 62713 TTAGATC--TTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62770 | || | | | ||| || | ||| | ||| | | | ||| | ||| || Sbjct 140977 TCAGTTTAATAGCACTTTCGT--TTTCATAAGGAATGCGCATCAATACAAATGTGTCAGC 140920 Query 62771 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62830 ||| || || |||||||| || ||||||||||||||| |||| || | | |||||||| Sbjct 140919 TAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTTTGCTTCTGG 140860 Query 62831 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGAC 62887 | |||||| | || | ||| ||||||||||| || || |||||||| || Sbjct 140859 CACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAATT---TTAGT 140803 Query 62888 CACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT--ATT-ACAAACATGTTCAATGC 62944 ||| ||||| || || | ||||| || ||| ||| |||||||| || || || Sbjct 140802 CACTTCCTTAAGCTTAATAAAATTGTATGTTTTATCATCATTCACAAACATATTTAACGC 140743 Query 62945 AACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGT 63004 || ||||||| ||| ||||| ||| |||| ||| | || | | || || || Sbjct 140742 AATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTCAACAATTTCTGT 140683 Query 63005 GCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 63064 || | || || ||||| || || || ||||||| |||||||||||| | ||||| || Sbjct 140682 ACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTATTACAGGC 140623 Query 63065 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 ||||||||| || || |||| || |||||||||| || | |||||||| |||||||| Sbjct 140622 ATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCTTTCCA 140563 Query 63125 GACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATAC 63182 | | | |||| || | | | || || | ||| || | || ||| ||| Sbjct 140562 TAGTATTTGAGCTTTAACTT--GCTTGACATAACGTTTTTCCTGTTCATATTTTTCATAG 140505 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCTAGGACATTCATCCGGACACAT 63241 | | || || || || |||||| || | | | | || |||| | |||| || ||||| Sbjct 140504 AGTGCCTCAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGAGAATCATGAGGGCACAT 140446 Query 63242 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63301 | ||| ||| | | | || || ||||||||||| | ||| || ||||| | ||| Sbjct 140445 AAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCTGGGATCCACAAAGC 140386 Query 63302 TATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 ||| || || ||||||| ||| |||||| || || ||||||||| | ||| | | Sbjct 140385 -ATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTTTTCAAATCCAAAA 140327 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 | | | ||||| | |||||| || || ||||| | || | |||| || ||||| | Sbjct 140326 ATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCTCCTGGTCGTTTAT 140267 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 |||| || ||||| | ||||| || ||||| || ||||| | |||||| |||| || || Sbjct 140266 TTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAACATAGGAACAACAC 140207 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAAT 63538 | ||||| | ||||| || || | |||||| || | || | ||| | | | | Sbjct 140206 CATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTAATGCAATGC-ACA 140148 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 ||| | ||| || || || || || || || ||||| ||| | ||||| |||||||| Sbjct 140147 TGA-ACACCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTTTAAAGTGTCATA 140089 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 || || || ||||| ||||| |||| || ||||||||| ||||| || | | Sbjct 140088 TATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGACAACTGAGGTCT 140029 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | ||| | ||| ||| | || ||| ||||| ||||| |||||||||| | || Sbjct 140028 TGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATTTTTCAGATAATAA 139969 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 |||||| || | ||||| | || ||||| ||| ||||| | | || | ||| Sbjct 139968 ATTGTATGTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAATAGATACTCTCAT 139909 Query 63779 TAACATGTGCTGAGGTCTTTCAACAA 63804 |||||| ||||| ||||| ||||||| Sbjct 139908 TAACATATGCTGTGGTCTCTCAACAA 139883 >seq142 Length=7807734 Score = 109 bits (120), Expect = 7e-19 Identities = 106/134 (79%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 34041 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 ||||| |||| ||| | | || |||| || | ||||||||||||||||||||||||| Sbjct 5993919 GTTAGGTTATGTCAACAAGT--TACCTTT-GACAAATCCACTTCTTCCACTGTCCAAAAT 5993863 Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 ||||| || || || || ||||| ||||| || ||| |||| || |||||||| || ||| Sbjct 5993862 GATGCTTCCGCTTTCTTGTACATTTTCCATATATCAGGATACTGAATTGGGAATATTACA 5993803 Query 34161 AATCTATTTGGATT 34174 |||| ||||||| Sbjct 5993802 AATCGTCTTGGATT 5993789 Score = 109 bits (120), Expect = 7e-19 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || ||| ||| | ||| || || || ||||| ||||| || || | ||| | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||||||| || || ||||||||||| ||||| |||||||| |||| Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33778 | | | | || || || | |||||| || ||||||| | ||||||| || Sbjct 5994892 CGACGATACGTTCACC--AAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTC 5994835 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||||||||||| ||||| |||| || || ||||| || || Sbjct 5994834 AGCCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAA 5994793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| ||||| | ||||| || || || || || || |||||| |||| || || Sbjct 5994340 TACATTTCAGAATGTACATTTTCCATAGCAATTTGGAACCCATAGAAAAATCTGGCTTCA 5994281 Query 33933 GTAATCTGCACTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || | || || || ||| | || | |||| | | ||||||||| ||||||||||| Sbjct 5994280 GTCACTTGGACCTCCTGTG-AGAACCTTTCTACAAGATTTTCATTGACTATTCCATCTGA 5994222 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 34026 || || || || ||||| ||||| || ||||||| Sbjct 5994221 TGCAGCGAAGAATGCCAAAACATGCTTAATAAAAT 5994187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629756641529040