Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2594 571 5e-158 seq142 84.2 2e-11 >seq2594 Length=7326867 Score = 571 bits (632), Expect = 5e-158 Identities = 1197/1767 (68%), Gaps = 38/1767 (2%) Strand=Plus/Minus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||| | || | ||| || | | ||||||||||||||| || | |||| | || Sbjct 141638 ATAGCATTGGCAGCAGGTTTAGTACGTAAATAATACATTCCAGTCTTCAAACCCATTTTC 141579 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 ||| | |||||||| ||| |||| ||| |||| |||| | | | || ||| | Sbjct 141578 CATGCATAAAAATGTATAGACGTCAATTTGCCGTAATTAGGGGCAGCCACATGTATATTG 141519 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACAT-TT 36983 | ||| || || ||||||||||| || ||||| || || ||||||| |||| | || Sbjct 141518 AATGACTGGCTCTGATCTATAAATGCTCCTCTATCTGCGGCCATTTG---AATAGTTGTT 141462 Query 36984 TTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA---TCT 37038 |||| || |||||||| || |||||||| | | | || | | || | | || Sbjct 141461 TTGACTGAAATCTCCCAGACAGTTTTATACAAGTCCCTGATTTCTTTAGGAATAGCCTCA 141402 Query 37039 AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATA 37098 | || ||| ||||| ||||||| | ||| || || ||||| | || ||||| | Sbjct 141401 ATATTTTGTATAGATCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATCCCACAAA 141342 Query 37099 TTT-CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAA 37157 | | || || ||| || | ||| | || ||||||| || ||||| |||||||| | Sbjct 141341 TCTGCTTCTG-TTAAATCCCGCAACAAATGATGATTTACCACTTGAAATTCTCCAGACAG 141283 Query 37158 TACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATAT 37217 ||||| |||| || ||||| || | || |||| || ||||| |||| | ||| Sbjct 141282 TACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTAT 141223 Query 37218 TTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGT 37277 ||||| || || ||||| ||||| || ||||||||||| ||| | || ||||||| | Sbjct 141222 TTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCCATGTTT 141163 Query 37278 ATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACAT 37337 |||| | | |||| | | | ||||||||| | |||||| || | || |||||| Sbjct 141162 GGCAATTTTTTCCTTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTTCCACAT 141103 Query 37338 ATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTA 37397 ||||| |||| ||||||| ||| | ||| | | | ||| || ||||| || || Sbjct 141102 CTCATACTGTAATATACCTTGACTAACAGGACTACCTTCATAAGTTTCATATACACCATA 141043 Query 37398 AATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTG 37457 ||| || | ||||||||| | ||||| || ||||||| || ||||| || ||||| Sbjct 141042 TTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATATTTG 140983 Query 37458 TATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATC 37517 | ||| | | | | || |||| | || | | | || || |||| ||| || Sbjct 140982 TTGATTCAGTTTAATAGCACTTTCGTTTTCATAAGGAATGCGCATCAATACAAATGTGTC 140923 Query 37518 AGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTC 37577 ||| |||||||| ||||| || || || ||||||||| || |||| ||| | | ||| Sbjct 140922 AGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTTTGCTTC 140863 Query 37578 TATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGT 37637 | |||||||||| | |||| ||| || |||||||| || || | | | ||||| || Sbjct 140862 TGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAATTTTAGT 140803 Query 37638 AATTATTCTCAA-CTTGTCGAACATAA--ATACGTT-----ATTATTAACAAATTTACTC 37689 | | | || || ||| || | || || ||| || ||| ||||| || | Sbjct 140802 CACT-TCCTTAAGCTT----AATAAAATTGTATGTTTTATCATCATTCACAAACATATTT 140748 Query 37690 AACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATC 37749 |||| ||| ||| | | ||| || || || ||||||| | | | | | ||| Sbjct 140747 AACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTCAACAATT 140688 Query 37750 TCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTA 37809 |||||||| | || || | ||||||| |||||||| | ||||| ||| ||||| Sbjct 140687 TCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTATTA 140628 Query 37810 CAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGAT 37869 || | ||| |||||||| ||||| || || || ||| | ||| ||||| ||||||| | Sbjct 140627 CAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCT 140568 Query 37870 TTCCATAAACTTCTTGCTTTAACGATCGCTT----TAAtttttttCTTTGTTTCGTATTC 37925 ||||||| || |||||||| | |||| ||| |||||| | ||| |||| Sbjct 140567 TTCCATAGTATTTGAGCTTTAAC--TTGCTTGACATAACGTTTTTCCT--GTTCATATTT 140512 Query 37926 TATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATG 37984 | ||| | | | ||| || | ||||| ||| || || ||| ||| | || | Sbjct 140511 TTCATAGAGTGCCTCAAATTCCTCACCCCA-ACAGTCTGCTAGTCCAGGAGAATCATGAG 140453 Query 37985 GACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCC 38044 | ||||| ||| ||| ||||||| ||| || ||||||| |||||||||||| || | || Sbjct 140452 GGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCTGGGATCC 140393 Query 38045 ATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGC 38104 | || ||| || | ||| | | ||| ||| || || || ||||||| | || Sbjct 140392 ACAAAGCATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTTTTCAAAT 140333 Query 38105 TTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTC 38164 | ||| ||||||||||| || ||||| || |||| || | | | |||||||||| Sbjct 140332 CCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCTCCTGGTC 140273 Query 38165 TTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTA 38224 ||||| || || |||| || |||||| | ||||| || || | | |||||||| | Sbjct 140272 GTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAACATAGGAA 140213 Query 38225 CTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTAT--ATT 38282 | | |||||| || || ||| | || | ||||| || || || |||| || | | Sbjct 140212 CAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTAATGCAAT 140153 Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGT 38342 | || ||| || || ||||| || ||||| || || || ||||| ||||| || Sbjct 140152 GCACATGAACA--CCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTTTAAAGT 140095 Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTG 38402 ||| |||| || || || |||||||| || |||| | | |||||| ||||| || Sbjct 140094 GTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGACAACTG 140035 Query 38403 AGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGA 38462 ||| ||| ||| | || ||| | || ||| ||| || | || ||||||| || Sbjct 140034 AGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATTTTTCAGA 139975 Query 38463 CAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATAC 38522 || |||| ||||| | || || |||| ||||| | || || || || | |||||| Sbjct 139974 TAATAAATTGTATGTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAATAGATAC 139915 Query 38523 CCTCATTAGCATATGTTGTGGTCTTTC 38549 ||||||| |||||| |||||||| || Sbjct 139914 TCTCATTAACATATGCTGTGGTCTCTC 139888 >seq142 Length=7807734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | ||||| || |||| ||| |||||||| ||||| | |||||||||||| Sbjct 5994371 ATCTCTGATGTATGTGTCAATTAGTAATGAGTACATTTCAGAATGTACATTTTCCATAGC 5994312 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 ||||| || ||||||||| ||| || || | ||| || || ||| | || |||| Sbjct 5994311 AATTTGGAACCCATAGAAAAATCTGGCTTCAG-TCACTTGGACCTCCTGTGAGAACCTTT 5994253 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCA---AAAAATGCTAGTATATGTT 12065 | | | ||| ||||| || || ||||| |||||| || ||||| | | ||| | Sbjct 5994252 CTACAAGATTTTCATTGACTATTCCATC---TGATGCAGCGAAGAATGCCAAAACATGCT 5994196 Query 12066 TTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGA 12120 | ||||| | |||| | | ||| |||||| ||| |||||| | ||| Sbjct 5994195 TAATAAAATGCCTTTCACAATCCTTCAATGAATCCCAGTCAGATAAATCCTGTGA 5994141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468479452655920