Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2594 488 7e-133 seq142 105 9e-18 >seq2594 Length=7326867 Score = 488 bits (540), Expect = 7e-133 Identities = 1174/1757 (67%), Gaps = 36/1757 (2%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| ||||||| ||| |||||||| || || | ||| | ||||| | |||||| Sbjct 141626 GCAGGTTTAGTACGTAAATAATACATTCCAGTCTTCAAACCCATTTTCCATGCATAAAAA 141567 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || ||| ||| | |||| ||| | || | || | ||| ||||| | || || || Sbjct 141566 TGTATAGACGTCAATTTGCCGTAATTAGGGGCAGCCACATGTATATTGAATGACTGGCTC 141507 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| || || ||||| || ||||| ||||||| || | || || || ||| ||| Sbjct 141506 TGATCTATAAATGCTCCTCTATCTGCGGCCATTTGAATAGTTGTTTTGACTGAAATCTCC 141447 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGA 65095 || | ||||||||| || || || | | |||| |||| | |||| || || || Sbjct 141446 CAGACAGTTTTATACAAGTCCCTGATT-TCTTTAGGAATAGCCTCAATATTTTGTATAGA 141388 Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 |||| || ||||| || || || || |||| ||| || | | || ||||| Sbjct 141387 TCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATCCCACAAATCTGCTTCTGTTAA 141328 Query 65156 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 65215 | | | | | ||| |||| || ||||||||||||||||||| ||||| | ||| Sbjct 141327 ATCCCGCAACAAATGATGATTTACCACTTGAAATTCTCCAGACAGTACTCGTCTTTGGTA 141268 Query 65216 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 65275 ||||||| || | || || | || ||||| || || | ||||||||||| || || Sbjct 141267 AATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTGAGCAGTGGAAGC 141208 Query 65276 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 65333 ||| |||||||| || | | | ||| | || || ||||| | ||||| || Sbjct 141207 AGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCC--ATGTTTGGCAATTTTTTCC 141150 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 65393 |||| || ||||| ||||||||| | || |||| Sbjct 141149 TTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTTCCACATCTCATACTGTAAT 141090 Query 65394 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 ||||| | ||| | | || | ||| |||| || || ||| || | || || || | Sbjct 141089 ATACCTTGACTAACAGGACTA-CCTTCATAAGTTTCATATACACCATATTTTTCTGCCAA 141031 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 ||| ||||| || ||||| ||||| |||||||| ||||| || || | | ||| || | Sbjct 141030 TTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATATTTGTTGATTCAGTTT 140971 Query 65513 --TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 65570 | | ||| | | | ||| | ||| | | | ||| | ||| ||||| || Sbjct 140970 AATAGCACTTTC--GTTTTCATAAGGAATGCGCATCAATACAAATGTGTCAGCTAAACCC 140913 Query 65571 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 65630 || |||||||| || ||||||||||||||| |||| || | | |||||||| | ||| Sbjct 140912 TGCACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTTTGCTTCTGGCACTGGA 140853 Query 65631 TAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCC 65687 ||| | || | ||| ||||||||||| || || |||||||| || ||| ||| Sbjct 140852 TAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAATT---TTAGTCACTTCC 140796 Query 65688 TTCAGTTTGAGAAAATCAAATCGCTCATCT--ATT-ACAAACATGTTCAATGCAACAGAT 65744 || || || | ||||| || | ||| ||| |||||||| || || |||| ||| Sbjct 140795 TTAAGCTTAATAAAATTGTATGTTTTATCATCATTCACAAACATATTTAACGCAATGGAT 140736 Query 65745 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 65804 |||| ||| || || ||| |||| ||| | || | | || || || || | Sbjct 140735 GCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTCAACAATTTCTGTACACAAG 140676 Query 65805 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 65864 || || ||||| || || || ||||||| |||||||||||| | ||||| ||||||||| Sbjct 140675 TTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTATTACAGGCATCCTTA 140616 Query 65865 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 65924 || || || |||| || |||||||||| || | |||||||| |||||||| | | | Sbjct 140615 TATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCTTTCCATAGTATT 140556 Query 65925 CGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTT 65982 |||| || | | | || || | ||| || | || ||| | ||| | | | Sbjct 140555 TGAGCTTTAACTT--GCTTGACATAACGTTTTTCCTGTTCATATTTTTCATAGAGTGCCT 140498 Query 65983 CGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGAC 66041 | || || || |||||| || | | | | ||||||| | |||| || ||||| | | Sbjct 140497 CAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGAGAATCATGAGGGCACATAAGACTC 140439 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 66100 || ||| | | | || || ||||||||||| | ||| || ||||| | ||| ||| || Sbjct 140438 CAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCTGGGATCCACAAAGC-ATAGAA 140380 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | ||||| | ||| |||||| || || ||||||||| | ||| | || | | Sbjct 140379 CAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTTTTCAAATCCAAAAATTCGAA 140320 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 ||||| |||||| || || ||||| | || | |||| || ||||| ||||| || Sbjct 140319 TATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCTCCTGGTCGTTTATTTCCACC 140260 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||| | ||||| || ||||| || ||||| | |||||| |||| || |||||| || Sbjct 140259 TTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAACATAGGAACAACACCATTTGA 140200 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAGA 66338 ||||| || || | |||||| | || |||| | ||| | | | | ||| | | Sbjct 140199 AACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTAATGCAATGC-ACATGA-ACA 140142 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || || || || || || || ||||| ||| | ||||| || ||||| || ||| Sbjct 140141 CCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTTTAAAGTGTCATATATCCCC 140082 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 66458 || || || ||||| |||| || ||||||||| ||||| || | | ||| Sbjct 140081 TCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGACAACTGAGGTCTTGGGGTT 140022 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 | ||| ||| | || ||| ||||| ||||| |||||||||| | || |||||| Sbjct 140021 GCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATTTTTCAGATAATAAATTGTAT 139962 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 || | ||||| | || ||||| ||| ||||| | | || | ||||||||| Sbjct 139961 GTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAATAGATACTCTCATTAACATA 139902 Query 66579 TGCTGAGGTCTTTCAAC 66595 ||||| ||||| ||||| Sbjct 139901 TGCTGTGGTCTCTCAAC 139885 >seq142 Length=7807734 Score = 105 bits (116), Expect = 9e-18 Identities = 99/124 (80%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 36617 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 36676 ||||| |||| ||| | | || |||| || | ||||||||||||||||||||||||| Sbjct 5993919 GTTAGGTTATGTCAACAAGT--TACCTTT-GACAAATCCACTTCTTCCACTGTCCAAAAT 5993863 Query 36677 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 36736 ||||| || || || || ||||| ||||| || ||| |||| |||||||| || || ||| Sbjct 5993862 GATGCTTCCGCTTTCTTGTACATTTTCCATATATCAGGATACTGAATTGGGAATATTACA 5993803 Query 36737 AATC 36740 |||| Sbjct 5993802 AATC 5993799 Score = 105 bits (116), Expect = 9e-18 Identities = 157/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || ||| ||| | ||| ||| || || ||||| ||||| || || | ||| | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || ||||| ||||| || |||||||| || ||||| ||||| || |||| Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 36354 | | | | || ||| | ||| |||| || ||||||| | ||||||| || Sbjct 5994892 CGACGATACGTTCACCAAATGTGGC--TGTCTTGCTGGCGATCCACTGTAGAGCCCAGTC 5994835 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||||||||||| ||||| |||| ||||| || || || || Sbjct 5994834 AGCCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAA 5994793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658109097100120