Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2594 563 1e-155 seq142 123 4e-23 >seq2594 Length=7326867 Score = 563 bits (624), Expect = 1e-155 Identities = 1189/1752 (68%), Gaps = 26/1752 (1%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| ||||||| ||| |||||||| || || | ||| | ||||| | || ||| Sbjct 141626 GCAGGTTTAGTACGTAAATAATACATTCCAGTCTTCAAACCCATTTTCCATGCATAAAAA 141567 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || ||| ||| | |||| ||| | || | || | ||| ||||| | || || || Sbjct 141566 TGTATAGACGTCAATTTGCCGTAATTAGGGGCAGCCACATGTATATTGAATGACTGGCTC 141507 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| || || ||||| || ||||| ||||||| || | || || || ||| ||| Sbjct 141506 TGATCTATAAATGCTCCTCTATCTGCGGCCATTTGAATAGTTGTTTTGACTGAAATCTCC 141447 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGA 78974 || | ||||||||| || || || | | |||| |||| | |||| || || || Sbjct 141446 CAGACAGTTTTATACAAGTCCCTGATT-TCTTTAGGAATAGCCTCAATATTTTGTATAGA 141388 Query 78975 TCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 79034 |||| || ||||| || || || ||||||| ||| || | | || ||||| Sbjct 141387 TCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATCCCACAAATCTGCTTCTGTTAA 141328 Query 79035 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 79094 | | | | | ||| |||| || ||||||||||||||||||| ||||| | ||| Sbjct 141327 ATCCCGCAACAAATGATGATTTACCACTTGAAATTCTCCAGACAGTACTCGTCTTTGGTA 141268 Query 79095 AATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGC 79154 ||||||| || | || || | |||||||| || || | ||||||||||| || || Sbjct 141267 AATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTGAGCAGTGGAAGC 141208 Query 79155 CGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCT 79212 ||||||||||| || | | | ||| | || || ||| | | ||||| || Sbjct 141207 AGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCC--ATGTTTGGCAATTTTTTCC 141150 Query 79213 TTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGA 79272 |||| || ||||||||||||||| | || ||||| | ||||| |||| Sbjct 141149 TTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTTCCACATCTCATACTGTAAT 141090 Query 79273 ATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAA 79331 ||||| | |||| | | | | ||| || |||||||| || | ||||| || || Sbjct 141089 ATACCTTGACTAACAGGACTA-CCTTCATAAGTTTCATATACACCATATTTTTCTGCCAA 141031 Query 79332 TTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATC 79391 ||| ||||| || ||||| || || |||||||| ||||| || || | | ||| || | Sbjct 141030 TTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATATTTGTTGATTCAGTTT 140971 Query 79392 TTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 79451 || | | | ||| | ||| | | | ||| | ||| ||||| || || Sbjct 140970 AATAGCACTTTCGTTTTCATAAGGAATGCGCATCAATACAAATGTGTCAGCTAAACCCTG 140911 Query 79452 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATA 79511 |||||||| || ||||||||||||||| |||| || | | |||||||| | ||||| Sbjct 140910 CACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTTTGCTTCTGGCACTGGATA 140851 Query 79512 ATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGAC-CACATCCTTTA 79570 | | || | ||| ||||||||||| || ||| ||| | | ||| | ||| ||||| | Sbjct 140850 AAAGTTGACATCAATAATTTTATTCAGGTTC-TGAGTGACAATTTTAGTCACTTCCTTAA 140792 Query 79571 GTTTGAGAAAATCAAATCGTCCATCT--ATT-ACAAACATGTTCAACGCGACAGATGCCA 79627 | || | ||||| || | ||| ||| |||||||| || ||||| | ||||||| Sbjct 140791 GCTTAATAAAATTGTATGTTTTATCATCATTCACAAACATATTTAACGCAATGGATGCCA 140732 Query 79628 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTAC 79687 ||| || || ||| |||| ||| | || | | ||||| || || | ||| | Sbjct 140731 AATTGCACACTGCTGTTTCATCTGCAGATGTGTACTCAACAATTTCTGTACACAAGTTGC 140672 Query 79688 TACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 79747 | |||||||| || || ||||||| |||||||||||| | ||||| ||||||||||| | Sbjct 140671 TGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTATTACAGGCATCCTTATATA 140612 Query 79748 GAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 79807 | || | || || |||||||||| || | |||||||| |||||||| | | | ||| Sbjct 140611 GCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCTTTCCATAGTATTTGAG 140552 Query 79808 CCTTTATTA--TAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 79865 | || | | | ||| | | | ||||| ||| |||| | ||| | | || || Sbjct 140551 CTTTAACTTGCTTGACAT--AACGTTTTTCCTGTTCATATTTTTCATAGAGTGCCTCAAA 140494 Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTC 79925 || || |||||| || ||| ||||||| | || | ||| ||||| | ||| || Sbjct 140493 TTCCTCACCCCAACAGTCTGCTAGTCCAGGAGAATCATGAGGGCACATAAGACTCCAGTC 140434 Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGAT 79984 | ||| | || || ||||||||||| | ||| || ||||| | ||| ||| || || | Sbjct 140433 TTCATTTTTCTCAACGCGTTTCATAAATAAATCTGGGATCCACAAAGC-ATAGAACAGTT 140375 Query 79985 CTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 80044 |||| | ||| ||||| || || ||||||||| | ||| | || | | |||| Sbjct 140374 CTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTTTTCAAATCCAAAAATTCGAATATAT 140315 Query 80045 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGAT 80104 | | |||||| || || ||||| | || | |||| |||||||| ||||| || |||| Sbjct 140314 CTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCTCCTGGTCGTTTATTTCCACCTTGAT 140255 Query 80105 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTAC 80164 | | ||||| || ||||| || ||||| | |||||| |||| || |||||| || | Sbjct 140254 CAACATATCTGGCAGTGTTGTTGTAAACACGCAACATAGGAACAACACCATTTGAAACTC 140195 Query 80165 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTAT 80222 |||| || || | |||||| | || | || | ||| | | | | ||| | ||| || Sbjct 140194 CATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTAATGCAATGC-ACATGA-ACACCAAT 140137 Query 80223 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 80282 || || || || || || ||||| ||| | ||||| || ||||| || ||||| || Sbjct 140136 ACCACCAGCTGACTTTGAAATCAATGCACATTGCTTTAAAGTGTCATATATCCCCTCAAT 140077 Query 80283 GCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 80342 ||| ||||| |||| || ||||||||| ||||| || | | ||| | || Sbjct 140076 GCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGACAACTGAGGTCTTGGGGTTGCAGC 140017 Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 80402 | ||| | || ||| ||||| ||||| |||||||||| | || |||||| || | Sbjct 140016 AGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATTTTTCAGATAATAAATTGTATGTGTT 139957 Query 80403 AATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTG 80462 ||||| | || ||||| ||| ||||| | | || | ||||||||| ||||| Sbjct 139956 GATAGCAGCATCAATATCTTCACCATGTATTCCAATAGATACTCTCATTAACATATGCTG 139897 Query 80463 AGGTCTTTCAAC 80474 ||||| ||||| Sbjct 139896 TGGTCTCTCAAC 139885 >seq142 Length=7807734 Score = 123 bits (136), Expect = 4e-23 Identities = 161/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || ||| ||| ||||| ||| || || ||||| ||||| || || | ||| | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| ||||| || ||||||||||| ||||| ||||| || |||| Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 50156 | || | | || || || || |||||| || ||||||| | ||||||| || Sbjct 5994892 CGACGATACGTTCACC--AAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTC 5994835 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||||||||||| ||||| |||| || || ||||| || || Sbjct 5994834 AGCCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAA 5994793 Score = 105 bits (116), Expect = 1e-17 Identities = 105/134 (78%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 50419 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478 ||||| |||| ||| | | || |||| || | ||| ||||||||||||||||||||| Sbjct 5993919 GTTAGGTTATGTCAACAAGT--TACCTTT-GACAAATCCACTTCTTCCACTGTCCAAAAT 5993863 Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 50538 ||||| || || || || ||||| ||||| || ||| |||| || |||||||| || ||| Sbjct 5993862 GATGCTTCCGCTTTCTTGTACATTTTCCATATATCAGGATACTGAATTGGGAATATTACA 5993803 Query 50539 AATCTATTTGGATT 50552 |||| ||||||| Sbjct 5993802 AATCGTCTTGGATT 5993789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718199280558520