Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq142 109 5e-19 >seq142 Length=7807734 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 ||| ||||||| | | | ||||| | | | |||||||| ||||| ||||| || Sbjct 5994398 ATTCAATAAATCTCACCTTTCTTTTGGATCTCTGATGTATGTGTCAATTAGTAATGAGTA 5994339 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||||||| |||| ||||||||||| || || || ||||| || |||| ||||| | Sbjct 5994338 CATTTCAGAATGTACATTTTCCATAGCAATTTGGAACCCATAGAAAAATCTGGCTTCAGT 5994279 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 | ||| || ||| | || ||||| | | ||||||||| ||||| ||||| || Sbjct 5994278 CACTTGGACCTCCTGTGAGAACCTTTCTACAAGATTTTCATTGACTATTCCATCTGATGC 5994219 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAA 14317 || || |||||||| | | |||||||| Sbjct 5994218 AGCGAAGAATGCCAAAACATGCTTAATAAA 5994189 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| ||| ||||||||| || ||||| | ||| ||||| | ||||| || | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || || | |||||| || |||||||| || || ||||||||||| || | Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | | ||||| ||||| | ||| | ||| | | ||||| | | |||||| |||| Sbjct 5994892 CGACGATACGTTCACCAAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTCAG 5994833 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 || ||||| | | | || || ||||| || || ||||| Sbjct 5994832 CCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAATAA 5994790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479681568326200