Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq142 109 5e-19 >seq142 Length=7807734 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 ||| ||||||| | | | ||||| | | | |||||||| ||||| ||||| || Sbjct 5994398 ATTCAATAAATCTCACCTTTCTTTTGGATCTCTGATGTATGTGTCAATTAGTAATGAGTA 5994339 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 ||||||||| |||| ||||| ||||| || || || ||||| ||| |||| ||||| | Sbjct 5994338 CATTTCAGAATGTACATTTTCCATAGCAATTTGGAACCCATAGAAAAATCTGGCTTCAGT 5994279 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 | ||| |||||| | || |||||| | | |||||||| || || ||||| || Sbjct 5994278 CACTTGGACCTCCTGTGAGAACCTTTCTACAAGATTTTCATTGACTATTCCATCTGATGC 5994219 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAA 14105 || || |||||||| | | |||||||| Sbjct 5994218 AGCGAAGAATGCCAAAACATGCTTAATAAA 5994189 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||| ||| ||||||||| || ||||| | ||| ||||| | ||||| || | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || || | ||| || || |||||||| || || ||||||||||| || | Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | | ||||| ||||| | ||| | ||| | | ||||| | | |||||| |||| Sbjct 5994892 CGACGATACGTTCACCAAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTCAG 5994833 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 || ||||| | | | || || || || || |||||||| Sbjct 5994832 CCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAATAA 5994790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478542478586520