Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5264 107 1e-18 seq2594 100 2e-16 >seq5264 Length=5978571 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||||| ||| |||||| || | ||||| |||||| Sbjct 3329733 CCACCACGGAGACGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3329674 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||||||||| || ||||||||||| ||||| || || | || Sbjct 3329673 AAGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 3329614 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | | || || | ||| ||||| || ||| || Sbjct 3329613 ATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATGGTGTCAGAAGGCTCAACT 3329554 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || |||||||| ||||||||||| Sbjct 3329553 TCCAGAGTAATGGTCTTACCAGTAAGGGTTTTCACGAAAATTTGCAT 3329507 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || | ||||||||| || | || |||||||| | |||||||||||| Sbjct 3783450 GCCACCTCGGAGACGTAACACCAAGTGAAGTGTAGATTCCTTTTGAATATTGTAATCGGA 3783391 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||||| ||| | || ||||| || ||||| || || ||||| |||||||| || | || Sbjct 3783390 TAATGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAACCGCTGTTGGTCTGGGGG 3783331 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| |||| || | ||| ||| || | || || Sbjct 3783330 GATGCCCTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATTGTATCAGATGGTTCTAC 3783271 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || |||||||| || | ||| ||||| || || |||||||| Sbjct 3783270 TTCCAAGGTGATGGTTTTTCCCGTCAAAGTCTTCACGAAGATCTGCATTTT 3783220 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||||| | ||| ||||| || | ||| || || || Sbjct 3329506 GCCACCACGGAGACGCAGTACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAGA 3329447 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || ||| | || |||| |||||| || ||||| || || ||||| ||||| | || Sbjct 3329446 GAGGGTGCGTCCATCTTCCAGTTGTTTACCAGCAAAGATTAAACGCTGCTGATCTGGGGG 3329387 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| ||||||| | ||| |||||| || || || Sbjct 3329386 GATACCTTCCTTATCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCTAC 3329327 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | | ||| ||||||||||| || ||||| ||||| || |||||| Sbjct 3329326 TTCCAAGGGTATGGTTTTTCCGGTGAGTGTTTTGACAAAGATCTGCATT 3329278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || || | || | ||| || || || | ||| |||||||| Sbjct 3786413 CCTCCACGGAGACGCAATACTAGGTGAAGAGTAGATTCTTTCTGAATATTATAATCGGAA 3786354 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || |||||||| || |||||||| | || ||| ||||| | || Sbjct 3786353 AGAGTGCGTCCATCTTCTAATTGTTTCCCAGCAAAAATGAGTCTCTGCTGATCAGGAGGG 3786294 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || || |||| || | ||| || || || ||| || Sbjct 3786293 ATACCCTCCTTATCTTGAATTTTGGCTTTAACATTTTCAATAGTATCTGAAGGCTCCACT 3786234 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || ||||| || ||||||||||||||| Sbjct 3786233 TCTAAAGTAATAGTTTTTCCAGTCAGAGTCTTAACAAAAATTTGCATT 3786186 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | ||||| |||||||| || || | || ||||| |||||||| ||||| Sbjct 3329014 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAA 3328955 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| ||||| || || | || | |||||||| || |||| | || || | Sbjct 3328954 GATCAAACGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTCACATT 3328895 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | ||||| || || || || | || || |||||||| || ||||||||||| Sbjct 3328894 CTCTATGGTGTCTGAAGGTTCTACTTCAAGGGTGATGGTTTTTCCAGTGAGAGTTTTCAC 3328835 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 3328834 AAAGATCTGCAT 3328823 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | ||||| |||||||| || || | || ||||| |||||||| ||||| Sbjct 3328558 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAA 3328499 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| ||||| || || | || | |||||||| || |||| | || || | Sbjct 3328498 GATCAAACGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTCACATT 3328439 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | ||||| || || || || | || || |||||||| || || |||||||| Sbjct 3328438 CTCTATGGTGTCTGAAGGTTCTACTTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTCAC 3328379 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 3328378 AAAGATCTGCAT 3328367 >seq2594 Length=7326867 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || |||||||| || | ||| ||||| || | ||| || || ||| Sbjct 5011870 CCTCCTCTCAACCTCAACACCAAGTGCAAGGTGGATTCCTTCTGAATATTATAGTCTGAC 5011929 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||| |||||||||||||| |||| |||||| || || | || Sbjct 5011930 AAAGTGCGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGTGGA 5011989 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| || |||| || | | | |||||| ||| ||||| Sbjct 5011990 ATACCTTCCTTATC-CTGAATTTTGGCTTTAACATTTTCGATAGTGTCGGAAGCTTCGAC 5012048 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || ||||| ||||| || || || |||||| Sbjct 5012049 CTCAAGGGTGATGGTCTTCCCTGTTAGCGTTTTTACGAAGATCTGCATT 5012097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381333610985094