Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2594 542 4e-149 seq142 109 7e-19 >seq2594 Length=7326867 Score = 542 bits (600), Expect = 4e-149 Identities = 1197/1777 (67%), Gaps = 34/1777 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 |||||||| || | | || || | ||| ||||||| ||| ||||| || || || | | Sbjct 141647 GTAAACTGGATAGCATTGGCAGCAGGTTTAGTACGTAAATAATACATTCCAGTCTTCAAA 141588 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | ||||| | |||||||| ||| ||| | |||| || |||| | || | Sbjct 141587 CCCATTTTCCATGCATAAAAATGTATAGACGTCAATTTGCCGTAATTAGGGGCAGCCACA 141528 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || ||||| | ||||| || ||||| || || ||||| || ||||| ||||||| || Sbjct 141527 TGTATATTGAATGACTGGCTCTGATCTATAAATGCTCCTCTATCTGCGGCCATTTGAATA 141468 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 71039 | || || || ||| ||||| | ||||||||| || || || | | |||| |||| Sbjct 141467 GTTGTTTTGACTGAAATCTCCCAGACAGTTTTATACAAGTCCCTGATT-TCTTTAGGAAT 141409 Query 71040 G---TTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 | |||| || || |||||| || |||||| ||||| || ||||||| Sbjct 141408 AGCCTCAATATTTTGTATAGATCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATC 141349 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| || | | || |||||| | | | | |||| |||| || |||||||||||||| Sbjct 141348 CCACAAATCTGCTTCTGTTAAATCCCGCAACAAATGATGATTTACCACTTGAAATTCTCC 141289 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 ||||| ||||| | |||||||||| || | || || | ||| ||||| || || Sbjct 141288 AGACAGTACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACC 141229 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | ||||||||||| || ||||| |||||||| || | | || ||| | || || Sbjct 141228 AAGTATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCC 141169 Query 71277 ATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACN 71334 |||| | || ||||| || |||| || ||||| ||||||||| | || Sbjct 141168 ATGT--TTGGCAATTTTTTCCTTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTG 141111 Query 71335 NNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTA 71393 || || | |||| | | | | ||| |||| || || || Sbjct 141110 TTCCACATCTCATACTGTAATATACCTTGACTAACAGGACTA-CCTTCATAAGTTTCATA 141052 Query 71394 TGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTC 71453 | || | |||||| || | ||| ||||| || ||||| || ||||||||||| ||||| Sbjct 141051 TACACCATATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTC 140992 Query 71454 GAAAATCTTCTTATTGAGATC--TTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 || || | | ||| || | | | ||| || | ||| | ||| | | Sbjct 140991 AAATATTTGTTGATTCAGTTTAATAGCACTTTCGT--TTTCATAAGGAATGCGCATCAAT 140934 Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571 | ||| | ||| ||||| || || || ||||| || |||||||| |||||| |||| || Sbjct 140933 ACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATTTGAT 140874 Query 71572 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACT 71631 | | |||||||| | |||||| | || | ||| ||||||||||| || || |||| | Sbjct 140873 TTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTT-CTGAGT 140815 Query 71632 ATTACTTTGAC-CACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT--ATT-ACAAA 71687 | ||| | ||| ||||| || || | ||||| || | ||| ||| ||||| Sbjct 140814 GACAATTTTAGTCACTTCCTTAAGCTTAATAAAATTGTATGTTTTATCATCATTCACAAA 140755 Query 71688 CACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTG 71747 || || || |||| ||||||| ||| || || ||| |||| ||| | || | Sbjct 140754 CATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTC 140695 Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807 | |||||| || || | || || ||||| || || || ||||||| ||||||||||| Sbjct 140694 AACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTT 140635 Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 | | ||||| ||||||||||| || ||| | || || |||||||||| || | ||||| Sbjct 140634 TCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTAT 140575 Query 71868 AATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTG---TATCTCTTTTCTCTTTC 71924 ||| |||||||| | | | |||| || | | | |||| || | ||||| ||| Sbjct 140574 AATAGCTTTCCATAGTATTTGAGCTTTAACT---TGCTTGACATAACGTTTTTCCTGTTC 140518 Query 71925 GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATT 71983 |||| | ||| | | || || || || |||||| || | | ||| ||||||| | | Sbjct 140517 ATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGAGAAT 140459 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 ||| || ||||| | ||| ||| ||| | | || ||||||||||| | ||| | Sbjct 140458 CATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCTG 140399 Query 72044 GAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 | ||||| | ||| ||| || || ||||| | ||| ||||| || || ||||||| Sbjct 140398 GGATCCACAAAGC-ATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTT 140340 Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162 || | ||| | || | | ||||| | |||||| || || ||||| | || | || Sbjct 140339 TTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCT 140280 Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 || || ||||| ||||| || ||||| | ||||| || ||||| || ||||| | |||| Sbjct 140279 CCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAAC 140220 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 || |||| || |||||| || | ||||| || || | |||||| | || | || | | Sbjct 140219 ATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTA 140160 Query 72283 AT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340 || | ||| | ||| | ||| || || || || || || || ||||| ||| | | Sbjct 140159 ATGCAATGC-ACATGA-ACACCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCT 140102 Query 72341 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 72400 |||| || ||||| || ||||| || || ||||| |||| || ||||||||| || Sbjct 140101 TTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAG 140042 Query 72401 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 72460 ||| || | | ||| | ||| ||| | || ||| ||||| ||||| ||| Sbjct 140041 ACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATT 139982 Query 72461 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTA 72520 ||||||| | || |||||| || | ||||| | || ||||| ||||||||| | Sbjct 139981 TTTCAGATAATAAATTGTATGTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAA 139922 Query 72521 CCGCGACACGCATTAACATATGCTGAGGTCTTTCAAC 72557 | || | ||||||||||||||| ||||| ||||| Sbjct 139921 TAGATACTCTCATTAACATATGCTGTGGTCTCTCAAC 139885 >seq142 Length=7807734 Score = 109 bits (120), Expect = 7e-19 Identities = 92/112 (82%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 || |||| || | ||| |||||||| || ||||||||||||||||| || || || |||| Sbjct 5993899 TACCTTT-GACAAATCCACTTCTTCCACTGTCCAAAATGATGCTTCCGCTTTCTTGTACA 5993841 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 | ||||| |||||| |||| ||||||||||| || ||||||| ||||||| Sbjct 5993840 TTTTCCATATATCAGGATACTGAATTGGGAATATTACAAATCGTCTTGGATT 5993789 Score = 109 bits (120), Expect = 7e-19 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| ||| ||| | ||| ||| || || ||||| ||||| || || | ||| | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || ||||||||||| ||||| ||||| || |||| Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 42261 | | | | || ||| | || ||||| || ||||||| | ||||||| || Sbjct 5994892 CGACGATACGTTCACCAAATGTGG--CTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTC 5994835 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||||||||||| ||||| |||| || || ||||| || || Sbjct 5994834 AGCCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAA 5994793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671074242114680