Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1951 141 1e-28 seq6704 114 2e-20 seq142 107 3e-18 seq1073 100 4e-16 >seq1951 Length=12115595 Score = 141 bits (156), Expect = 1e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 126747 ACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTT 126806 |||||| ||||||||||| || | || || |||||||| ||||| || ||||| ||||| Sbjct 9452756 ACCGAGCCTGATGCCGCTGGGGTTCAGCGCACTCTTGTCGCCGGGCACAGTGTTCTTGTT 9452815 Query 126807 GCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACACT 126866 ||| |||| | |||||| || || | |||||| ||||| || || ||||| |||||||| Sbjct 9452816 GCAGGCGACGCCGCACAGCTCCAGCACGCGCTCAGCCGGCGCCCCCGCGAGCCCCACACT 9452875 Query 126867 GCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTCG 126926 ||||| ||||| || ||| ||||| || || ||||| || | | | ||||||| || Sbjct 9452876 GCGCATGTCCACCAGCGCCAGGTGCACGTCCGTGCCGCCCGTCGCTATGTTGTAGCCCCG 9452935 Query 126927 TGA 126929 || Sbjct 9452936 CGA 9452938 >seq6704 Length=10608496 Score = 114 bits (126), Expect = 2e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 |||||| ||||| | || || | | || ||||||| ||| | ||||| | | ||| Sbjct 4680896 AATCCAGCAGATCGAAGAATGTTGGTATGTGCATGGAACCCTTCTGATTTAGGCAAGATG 4680955 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGC 70312 |||||||| || || || || |||| ||||| | | | |||||| ||| ||| Sbjct 4680956 GCACTACCTCCTTGCCATTGCCTGGCACAGTTCCATGTGGCCAATGGCAGATTAAATTGC 4681015 Query 70313 TTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTAT 70372 || | || || ||||||||||||||||| || ||||| ||||| || || || || ||| Sbjct 4681016 CTACTTTACCAAAGGAGTGCCGACATGGGACTGGGTGTTCCCTTCAATATAGCCAGTTAT 4681075 Query 70373 TCTATGTTGACGCACATGATTGCTCA 70398 ||||| | || ||||||||||| || Sbjct 4681076 GCTATGCTTACTCACATGATTGCACA 4681101 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 70494 GGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTT 70553 ||||||| ||| |||| |||| || ||||||||| ||||||||| ||||||| || Sbjct 4681524 GGGAGCCCAGATCTTTCCCCACTTTGATGTTTGCTCGCAAAGTTGAATCTATTGACGATT 4681583 Query 70554 TTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTC 70613 |||| | |||||||||||| || | || ||| | ||| |||| || || |||| Sbjct 4681584 TTAAATTCGAAGATTTTATCATTGAGGGCTACAAACCACACCCAAAAATAGAAATGGCAA 4681643 Query 70614 TGGCTGTTTA 70623 |||||||||| Sbjct 4681644 TGGCTGTTTA 4681653 >seq142 Length=7807734 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||| || || || ||||||||||||||||| |||||||| ||||||| ||| Sbjct 5994889 GTCGCCTTCGCTGCAGTTGAAGGCATCTTCTTTTCGGGCAGTTTTGCTTCCATCTTCTGG 5994948 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||| | ||||||||||| ||||| || ||| || || |||| ||| | || Sbjct 5994949 CTGAAGAAGAGAGGACTCATGCCTGGACTTACATTCAGCAATGAACTTATTTCTAGGGAT 5995008 Query 125550 GAGG 125553 |||| Sbjct 5995009 GAGG 5995012 >seq1073 Length=6928084 Score = 100 bits (110), Expect = 4e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 49796 ACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAG 49855 || |||||||||||||||||| | ||||||||||| ||||||| || | |||||||| Sbjct 3732352 ACAGTGGAGCCTCCCATGTTTTTCTACATGATGGCTTTCATGATCACGTCAGTCATCGAA 3732293 Query 49856 CAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTAC 49900 || | ||||| || ||| |||| ||||| || || ||||||||| Sbjct 3732292 CAAACATTTTATGTTTACAAAGCATGCACAGTAAATCATGGCTAC 3732248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740987474732680