Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq557 269 2e-67 seq5264 104 2e-17 seq381 104 2e-17 seq6227 86.0 5e-12 >seq557 Length=1183051 Score = 269 bits (298), Expect = 2e-67 Identities = 652/980 (67%), Gaps = 13/980 (1%) Strand=Plus/Plus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 ||||||| |||| | | ||||| || |||||||||| ||| | || | ||||| Sbjct 1025996 TTCGTTTGCAATATCCCTGTAATCAACTACGCCGTCTTGCCACGAACCCTTGCAAGGCCC 1026055 Query 100369 GGCAGCTGTGCCTGTGAAATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCG 100428 | || | || |||||| || ||||| ||| | || || ||||| || | Sbjct 1026056 TGTGGCGATCCCAGTGAAAGGATTATCACCCGTGTAGTTCTGGACACCGGTCCATCCTCT 1026115 Query 100429 GCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA 100488 ||| ||||| || || || |||| ||| || || ||| || || || || Sbjct 1026116 GCCATACATAGCTACACCTACAACAATCTTCTTCGAACTCACACCTTGAGCTAACAGGAA 1026175 Query 100489 TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGT 100548 ||| || || ||| || |||| ||| || || |||| |||||||| | || Sbjct 1026176 TTTAACACCGAAATCTGTCGTGTAAGTCTCCTTTGGCCTCCATGAAGGCGCGTACAAAGA 1026235 Query 100549 GGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAAA 100608 || || | ||||||| | |||||||||||| ||||| || ||||||||||| | || Sbjct 1026236 CGTCTGATGGCCCAAAGTGTCGTTTGACCAGGCTCCTTTGAAGTCGTAGCTCATGAAGAA 1026295 Query 100609 TATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCC 100668 ||| | || | || || || ||| ||| | ||||| ||||| || | || Sbjct 1026296 TATATGGTCCATGTATTTCTGAGCTTCGTTGTAGTTCACCACTTGGATTTTATCCCAACC 1026355 Query 100669 GGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTG-TAGCTGGTCCA 100727 | ||||| ||| |||| |||||| | || || |||| ||| || || || || | Sbjct 1026356 TGCGCTGATAGCGGAAGTCAGCTCGTATTTCTTTCCAGTTT-CAGCTGATAACTCGTTGA 1026414 Query 100728 GCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGC 100787 ||||| | || | |||||||| | | | |||| || |||| | ||| Sbjct 1026415 GCATCTCACGGAGTTCCTTCATCAGACTTACGTACACATCACCGTCTTTGGGAC---TGC 1026471 Query 100788 CAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAA 100847 | || | || || |||||||| ||||| || || ||||| || || || || || |||| Sbjct 1026472 CGAGGTTGGGATTAGCGCCTTTACCGCCAGGGAATTCCCAATCGATATCAACACCATCAA 1026531 Query 100848 AAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTT---- 100903 | || ||||| | || ||| || || || || | |||||| || | | || Sbjct 1026532 AGAATTTCCAGGTTTCCAGAAAATCTTTAACTGAAGCTACAAAC-CGATCTCTCTTAGAT 1026590 Query 100904 TCCGCATCGTGCATGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGA 100963 | || ||| | ||| |||| || || | ||| ||||| || ||||| || |||| Sbjct 1026591 TTGTCA--GTGAA-GAAGAAGAATGGATCAGCCAAAGTCCATCCACCGATAGATGGCAAG 1026647 Query 100964 ATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTAC 101023 ||||| |||| || || || | || | ||| | ||| || || ||||||||||| Sbjct 1026648 ATTTTCAGGTCAGGCTTAGCTTGTTTCAACATCATCAACTGGCCAAAGTTGCCCTTGTAT 1026707 Query 101024 GGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGA 101083 ||||||||||||| |||| ||||| || ||||| || | || ||||| ||||| || Sbjct 1026708 GGCTCGTTCCATGAAGACAATCCCTTCTGTGGTTTCTGGAGAGCTGCCCATGGATCATGG 1026767 Query 101084 ATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCG 101143 |||| || ||||| || || || |||| || ||||||| |||| |||||||| Sbjct 1026768 ATGGACACCTTGAAGTCCTCTCGGCCGCTGCACGATCGCTGCAAAGCTTGGAAACTGCCT 1026827 Query 101144 GGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTAC 101203 || || | |||||||| ||| ||||| |||||||| || ||||| |||||| Sbjct 1026828 TCGATTTCCTTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGGATGAAGCCGTAC 1026887 Query 101204 AACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACG 101263 | || ||| | | |||||| | ||||| ||||||||| || || | || ||| Sbjct 1026888 AGCAAATGGGTTAAATTGGGAATAGGCACGCGGTCTACCGGGAATTTTCTAGGATAGACG 1026947 Query 101264 CCCCACTCTACAAAATACGC 101283 ||||| || || |||||||| Sbjct 1026948 CCCCATTCGACGAAATACGC 1026967 >seq5264 Length=5978571 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || || |||||||||||||| || || | | ||| |||| Sbjct 3328350 AATACCAAGTGTAGAGTCGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCT 3328291 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||| || || ||| | || || | ||||||||| ||| | ||| |||||||| Sbjct 3328290 TCCAACTGCTTTCCAGCAAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCTTTGTCT 3328231 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| |||||| | | | |||||| ||| || ||| | ||||||||| Sbjct 3328230 TGGATTTTGGCTTTTACGTTTTCAATGGTATCGGAAGGTTCTACTTCCAAAGTAATGGTT 3328171 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||||| || || || || |||||||| |||||||| Sbjct 3328170 TTACCCGTCAATGTCTTAACAAAAATCTGCATTTT 3328136 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||| | ||| || | ||||| || || ||||||||||| ||||| || | Sbjct 3786187 TTCCTCCCCTCAATCGTAAAACTAAATGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAG 3786128 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||||||||| || | || || |||||||| || Sbjct 3786127 ATAGTGT----GCGTCCATCTTCTAGCTGTTTACCTGCGAATATTAGCCTCTGCTGGTCA 3786072 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | ||| |||||||| |||||| || || | | | |||||| ||| Sbjct 3786071 GGGGGAATGCCTTCTTTGTCTTGAATTTTAGCCTTCACATTTTCAATAGTATCCGAGGGC 3786012 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || || ||||| || || || || ||||| ||||||||||| Sbjct 3786011 TCCACCTCTAATGTGATAGTTTTGCCGGTCAATGTCTTGACGAAAATTTGCAT 3785959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC--- 18889 |||| ||| | ||||| || || |||||||||||||| | | ||| |||||| Sbjct 3783659 ACCAAGTGAAGTGTAGATTCTTTCTGAATATTGTAATCGGATAGTGT----GCGTCCATC 3783604 Query 18890 -TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||| ||| ||||| ||| | || |||| |||||| || || | |||||| ||||| Sbjct 3783603 TTCCAACTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC 3783544 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| || || | ||| ||| || ||||| ||| | |||||| || Sbjct 3783543 TTGAATTTTAGCCTTCACATTTTCGATAGTGTCTGATGGCTCTACTTCAAGGGTAATTGT 3783484 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || || ||||| ||||| |||||||| Sbjct 3783483 TTTTCCAGTCAAGGTTTTAACAAAGATTTGCAT 3783451 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| ||||| |||||||||||||| | | |||| | || ||| Sbjct 3784343 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCATCTTCC 3784284 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | ||| || || ||| | || | || ||||| || || | ||| |||||||| Sbjct 3784283 AACTGCTTGCCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 3784224 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || |||||| | | | |||||| ||||| || | ||||| |||||| Sbjct 3784223 ATCTTAGCTTTTACATTCTCAATAGTATCAGATGGCTCGACCTCCAACGTAATAGTTTTA 3784164 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||||||||||||||| ||||| Sbjct 3784163 CCGGTCAAAGTTTTGACAAAAATCTGCAT 3784135 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAGCTGTTT 18900 ||||| || || |||||||| ||||| | | || |||||| || | ||||| Sbjct 3786383 GTAGATTCTTTCTGAATATTATAATCGGAAAGAGT----GCGTCCATCTTCTAATTGTTT 3786328 Query 18901 ACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTG 18960 || ||| |||| |||||||||||||| || | ||||| || || |||||| Sbjct 3786327 CCCAGCAAAAATGAGTCTCTGCTGATCAGGAGGGATACCCTCCTTATCTTGAATTTTGGC 3786268 Query 18961 TTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAA 19020 ||| || | | | |||||| ||||||| ||| | ||||| ||||| || || | Sbjct 3786267 TTTAACATTTTCAATAGTATCTGAAGGCTCCACTTCTAAAGTAATAGTTTTTCCAGTCAG 3786208 Query 19021 AGTTTTGACAAAAATTTGCATT 19042 ||| || ||||||||||||||| Sbjct 3786207 AGTCTTAACAAAAATTTGCATT 3786186 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | || |||| |||| || || ||||| || ||||||||||| | Sbjct 3784817 CCACCTCTCAAACGCAAAACCAAATGCAGTGTTGATTCCTTCTGGATATTGTAATCAGAA 3784758 Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | ||| |||||| |||| ||| || || ||| | || | || ||||| || Sbjct 3784757 AGTGT----GCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGCTGGTCAGG 3784702 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 || | ||| |||||||| || || |||||| | | | |||||| ||||| Sbjct 3784701 AGGGATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTCTCAATAGTATCAGATGGCTC 3784642 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| |||||||| || ||||||||||||||||| ||||| Sbjct 3784641 GACCTCCAACGTAATAGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 3784591 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| ||||| |||||||||||||| | | |||| | || || Sbjct 3783887 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCATCTTCT 3783828 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | ||| || || ||| ||||||| | |||||| || || | ||| |||||||| Sbjct 3783827 AACTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCGGGTGGGATGCCTTCTTTGTCTTGG 3783768 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | ||| |||||| ||||| ||| | || || ||||| Sbjct 3783767 ATTTTAGCCTTAACATTTTCGATAGTATCTGATGGCTCAACTTCTAGTGTTATAGTTTTG 3783708 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||| || |||||||| Sbjct 3783707 CCAGTCAATGTCTTGACGAAGATTTGCAT 3783679 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || ||||| | | |||||||| ||| | ||||| |||||||||||||||||||| | Sbjct 3783449 CCACCTCGGAGACGTAACACCAAGTGAAGTGTAGATTCCTTTTGAATATTGTAATCGGAT 3783390 Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | ||| |||||| |||| ||| || || || | || | | ||| || || Sbjct 3783389 AATGT----GCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAACCGCTGTTGGTCTGG 3783334 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 ||| | ||||||||| || || || |||||| | | | ||||| || || Sbjct 3783333 GGGGATGCCCTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATTGTATCAGATGGTTC 3783274 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| | ||| |||||||| || || ||||| || || || || |||||||| Sbjct 3783273 TACTTCCAAGGTGATGGTTTTTCCCGTCAAAGTCTTCACGAAGATCTGCATTTT 3783220 >seq381 Length=8194978 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24873 ACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAA 24932 ||||||| ||||||||||| || || || || |||||| || || | |||||| Sbjct 1459947 ACCTTTTTCACATAATCGCGTCCTTTTACTAGGTATACGTAGTAACAACGGTCAAACCAA 1460006 Query 24933 AGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAG 24992 | || || || | |||||| ||||||| | ||||||| | | || ||||| ||| Sbjct 1460007 CGGGCATGCTGCTCCCACGGTACGTCATCCTTTTCCCAGTCTTTGAGTCCTCCGTCACAG 1460066 Query 24993 TAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTT 25052 ||| |||| ||| ||||||| ||||||||||| | ||||| || || || | | | Sbjct 1460067 TAATAACACTTGGTCTTGTCGCCTTGGCCGGTGTAATAAAAGCCGGCCTCGGCTAAATCT 1460126 Query 25053 TCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAA 25099 || || || || || || ||||| ||| |||| |||||||| Sbjct 1460127 TCTGGTTTCTGGGGCATACTACGAGGCCAGTCTTTAAAGGTGCGCAA 1460173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 25228 TACGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCG 25287 |||| || | || || || ||||||||| |||||||| || || ||||||||| Sbjct 1460311 TACGTAACAGAGGACACTGTGGCGCCCATCGCTGATGATCTTTGGCTGGATCGTCGCCCT 1460370 Query 25288 CCTCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCA 25347 || ||| ||||||||||||||||||||||| || || | ||||||||| |||| Sbjct 1460371 CCATCCACCGCATAATCTCCACTTTGCAAAAAGCACATCTCACTTCGTCATTTTTCCCCA 1460430 Query 25348 AGTAGTAGAACCCATTGGCGGCCATTTGTCGCGGCGACATAAATTCTACCGTCCAATT 25405 | ||||| || || || || | || | | ||||| | |||| ||| | ||| || Sbjct 1460431 AATAGTAAAAACCGTTTCTAGCTAGTTTTTGTGGCGAAAGAAATGGTACAGGCCAGTT 1460488 >seq6227 Length=4744074 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 ||||||||||| |||||| | ||||| || ||| | | || |||| || |||||| Sbjct 4519065 GGCGGCGTGGGGCTGAACCTGTGCGGCGCCAGCCACCTGCTGCTGCTGGACCCGCACTGG 4519006 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCA 34690 ||||||||| |||| ||| ||||| ||||||||| ||||| |||| || Sbjct 4519005 AACCCGCAGCTCGAGGAGCAAGCGCAGGACCGCATCTACCGCGTGGGGCA 4518956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414533677671742