Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq381 141 7e-29 seq5264 123 2e-23 seq2594 91.5 1e-13 >seq381 Length=8194978 Score = 141 bits (156), Expect = 7e-29 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 10909 AGTGAAGTTGAGCGTTTAAAAACATTTGTAGATTGGCCTGTTGTGTTTTTGTCGCCGCAA 10968 || |||| ||| || |||||||||||||| | |||||||| ||| | ||||| ||| Sbjct 1460518 AGAGAAGATGAACGCTTAAAAACATTTGTTAACTGGCCTGTACCATTTCTTTCGCCACAA 1460459 Query 10969 CTGTTAGCCAAAAATGGATTTTACTATTTGGGAAGAAGTGATGAGGTGAGATGTGCTTTT 11028 |||| | ||| || |||||||||||||| | || ||| || ||||||||||||||| Sbjct 1460458 AAACTAGCTAGAAACGGTTTTTACTATTTGGGGAAAAATGACGAAGTGAGATGTGCTTTT 1460399 Query 11029 TGTAAAGTAGAAATTATGCGTTGGAAAGAAGACGACGATCCAGAAACAGAACATAGAAAA 11088 || ||||| || |||||||| |||| || | ||||||||||| | ||| ||| | Sbjct 1460398 TGCAAAGTGGAGATTATGCGGTGGATGGAGGGCGACGATCCAGCCAAAGATCATCAGCGA 1460339 Query 11089 TGGTCTCCTCAATGTTCTTTGTTTCG 11114 ||| | || || ||| || |||| || Sbjct 1460338 TGGGCGCCACAGTGTCCTCTGTTACG 1460313 >seq5264 Length=5978571 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | || |||||||| || || || || || ||||| ||||| Sbjct 3784818 ACCACCTCTCAAACGCAAAACCAAATGCAGTGTTGATTCCTTCTGGATATTGTAATCAGA 3784759 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| ||||| || || || ||||| ||||| ||||||||||| |||| Sbjct 3784758 AAGTGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGCTGGTCAGGAGG 3784699 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| || || ||| || | ||| |||||| | ||||| || Sbjct 3784698 GATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTCTCAATAGTATCAGATGGCTCGAC 3784639 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||| ||||||||||| ||||| || ||||| || ||||| Sbjct 3784638 CTCCAACGTAATAGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 3784591 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| ||||| ||| || ||||| || || ||||| ||||||||||||||| Sbjct 3784134 ACCGCCTCGCAATCGTAATACTAAATGAAGTGTAGATTCTTTCTGAATATTATAATCGGA 3784075 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || |||| ||||| || || || || || ||||| ||||||||||| |||| Sbjct 3784074 TAGTGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGG 3784015 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||| || || | ||| || |||| || || || Sbjct 3784014 AATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTAC 3783955 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| || || |||||||| || || |||||||| Sbjct 3783954 CTCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 3783907 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| ||||| ||| || ||||| || || ||||| ||||||||||||||| Sbjct 3784590 ACCGCCTCGCAATCGTAATACTAAATGAAGTGTAGATTCTTTCTGAATATTATAATCGGA 3784531 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || |||| ||||| || || || || || ||||| ||||||||||| |||| Sbjct 3784530 TAGTGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGG 3784471 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||| || || | ||| || |||| || || || Sbjct 3784470 AATGCCTTCCTTGTCTTGGATTTTAGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTAC 3784411 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| || || |||||||| || || |||||||| Sbjct 3784410 CTCAAGTGTGATTGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 3784363 Score = 114 bits (126), Expect = 9e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||| ||||||||||||||| | | || || |||| || |||||||| || ||||| Sbjct 3786377 TCTTTCTGAATATTATAATCGGAAAGAGTG-CGTCCATCTTCTAATTGTTTCCCAGCAAA 3786319 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | | ||||| || |||| | ||| || |||||| |||||| ||| || | Sbjct 3786318 AATGAGTCTCTGCTGATCAGGAGGGATACCCTCCTTATCTTGAATTTTGGCTTTAACATT 3786259 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| |||||||| |||||||| || | ||||| ||||| || || | |||||| || Sbjct 3786258 TTCAATAGTATCTGAAGGCTCCACTTCTAAAGTAATAGTTTTTCCAGTCAGAGTCTTAAC 3786199 Query 44110 AAATATTTGCAT 44121 ||| |||||||| Sbjct 3786198 AAAAATTTGCAT 3786187 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || || || |||||||| ||||| | | || |||| ||| Sbjct 3784343 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTTCGTCCATCTTCC 3784284 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || || || ||||| ||||| ||||||||||| |||| | |||||||| ||| Sbjct 3784283 AACTGCTTGCCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 3784224 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || | ||| |||||| | ||||| || || | |||||| |||||| Sbjct 3784223 ATCTTAGCTTTTACATTCTCAATAGTATCAGATGGCTCGACCTCCAACGTAATAGTTTTA 3784164 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| ||||| || ||||| || ||||| Sbjct 3784163 CCGGTCAAAGTTTTGACAAAAATCTGCAT 3784135 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || ||||| ||||||||||||||| || | || |||| || Sbjct 3785484 CACCAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCGGATAGTGTGCGTCCATCTTC 3785425 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || || || || || |||||||| |||||||| |||| | ||||| || ||| Sbjct 3785424 CAACTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTG 3785365 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || | ||| || |||| || || || || | || |||||||| Sbjct 3785364 GATTTTTGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACCTCAAGTGTGATTGTTTT 3785305 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || |||||||| Sbjct 3785304 GCCAGTCAAAGTCTTGACGAAAATTTGCAT 3785275 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || ||||| ||||||||||||||| || | || |||| || Sbjct 3785940 CACCAAGTGAAGGGTAGATTCTTTCTGAATATTATAATCGGATAGTGTGCGTCCATCTTC 3785881 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || || || || || |||||||| |||||||| |||| | ||||| || ||| Sbjct 3785880 CAACTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTG 3785821 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || | ||| || |||| || || || || | || |||||||| Sbjct 3785820 GATTTTTGCCTTCACGTTTTCAATGGTGTCTGAAGGTTCTACCTCAAGTGTGATTGTTTT 3785761 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || |||||||| Sbjct 3785760 GCCAGTCAAAGTCTTGACGAAAATTTGCAT 3785731 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||||||||| || || || || ||||||||||| |||||| |||| || |||| Sbjct 3783435 TAACACCAAGTGAAGTGTAGATTCCTTTTGAATATTGTAATCGGATAATGTGCGTCCATC 3783376 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||| || || || || || |||||||| || ||||| | || | || |||||||| Sbjct 3783375 TTCCAACTGCTTGCCAGCGAAGATCAACCGCTGTTGGTCTGGGGGGATGCCCTCTTTATC 3783316 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | || || ||| || | ||| ||||| | || || || || | || || || Sbjct 3783315 TTGGATCTTGGCTTTTACATTCTCAATTGTATCAGATGGTTCTACTTCCAAGGTGATGGT 3783256 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || ||||||||||| || || ||||| Sbjct 3783255 TTTTCCCGTCAAAGTCTTCACGAAGATCTGCAT 3783223 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || ||||| |||||||| |||||| || | || |||| ||| Sbjct 3783659 ACCAAGTGAAGTGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCATCTTCC 3783600 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || || || ||||| |||| || |||||||| | || | || || || ||| | Sbjct 3783599 AACTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGA 3783540 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| || || | | | ||| |||| ||||| || || | ||||||||||| Sbjct 3783539 ATTTTAGCCTTCACATTTTCGATAGTGTCTGATGGCTCTACTTCAAGGGTAATTGTTTTT 3783480 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || || || ||||| ||||||||| Sbjct 3783479 CCAGTCAAGGTTTTAACAAAGATTTGCATG 3783450 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| ||||| || || |||||||||||||| || | | || | || Sbjct 3328350 AATACCAAGTGTAGAGTCGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCT 3328291 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || ||||| ||||| |||| || ||||| || | || | |||||||| ||| Sbjct 3328290 TCCAACTGCTTTCCAGCAAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCTTTGTCT 3328231 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| ||| || | ||| ||||| | || || || || | ||||| ||| Sbjct 3328230 TGGATTTTGGCTTTTACGTTTTCAATGGTATCGGAAGGTTCTACTTCCAAAGTAATGGTT 3328171 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||| ||||| || ||||| Sbjct 3328170 TTACCCGTCAATGTCTTAACAAAAATCTGCAT 3328139 >seq2594 Length=7326867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GT 43952 |||||||||||| || |||||||| || | ||| || || ||||||||||| || | Sbjct 5011869 ACCTCCTCTCAACCTCAACACCAAGTGCAAGGTGGATTCCTTCTGAATATTATAGTCTGA 5011928 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || || |||| ||||| ||||| || ||||| |||| || |||||||| | | Sbjct 5011929 CAAAGTG-CGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAGTCGCTGCTGGTCTGGTG 5011987 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||| ||||| |||||| ||| || | | | ||| || | | || | Sbjct 5011988 GAATACCTTCCTTATCCTGAATTTTGGCTTTAACATTTTCGATAGTGTCGGAAGCTTCGA 5012047 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || |||| || || || || || ||||| Sbjct 5012048 CCTCAAGGGTGATGGTCTTCCCTGTTAGCGTTTTTACGAAGATCTGCAT 5012096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354744120413964