Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5264 84.2 2e-11 >seq5264 Length=5978571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| ||| ||||| ||||| || || |||| | || | || ||| Sbjct 3329487 ACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAGAGAGGGTGCGTCCATCTTCC 3329428 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || ||||| | | ||||||||||||||||| || | || |||||| ||| Sbjct 3329427 AGTTGTTTACCAGCAAAGATTAAACGCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 3329368 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| |||| | | | || || || | || || || | | ||||||||| Sbjct 3329367 ATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCTACTTCCAAGGGTATGGTTTTT 3329308 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| ||||| ||||| |||||||| Sbjct 3329307 CCGGTGAGTGTTTTGACAAAGATCTGCAT 3329279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421211447445743