Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1782 122 5e-23 seq737 120 2e-22 seq508 120 2e-22 seq5009 118 6e-22 seq2271 118 6e-22 seq604 118 6e-22 seq5357 116 2e-21 seq142 116 2e-21 >seq1782 Length=11839424 Score = 122 bits (134), Expect = 5e-23 Identities = 85/95 (89%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 || ||||||||| || || |||||||||| |||||||||| |||||||||||||||| Sbjct 10783799 AAATAATAAAAA--CATATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 10783856 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||||||||||||||||||| Sbjct 10783857 AGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 10783891 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 10816523 AAAAA--AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 10816580 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 10816581 CTCTAACCAACTGAGCTAATGGGCCG 10816606 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 10817066 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10817125 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 10817126 TGAGCTAATGGGCCG 10817140 >seq737 Length=8342980 Score = 120 bits (132), Expect = 2e-22 Identities = 83/94 (88%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||| || | |||||||||| |||||||||| ||||||||||||||||| Sbjct 1987238 AATTAAGAAAATATTA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 1987294 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 1987295 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 1987328 >seq508 Length=1304068 Score = 120 bits (132), Expect = 2e-22 Identities = 81/91 (89%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| |||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 467690 AAAAAAAAAAATACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 467631 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||||||||||||||||||||| Sbjct 467630 GACGCTCTAACCAACTGAGCTAATGGGCCGT 467600 >seq5009 Length=10104426 Score = 118 bits (130), Expect = 6e-22 Identities = 81/90 (90%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| | || |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 9193266 ATAAAAAA--AGATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 9193209 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 9193208 GACGCTCTAACCAACTGAGCTAATGGGCCG 9193179 >seq2271 Length=4634553 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4009449 AAAAAAAAAACTATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 4009508 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 4009509 GACGCTCTAACCAACTGAGCTAATGGGCC 4009537 >seq604 Length=12374848 Score = 118 bits (130), Expect = 6e-22 Identities = 85/99 (86%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| || ||||||| | | |||||||||| |||||||||| |||||||||||| Sbjct 6327485 TATACAAAAAATAAAATAATTTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 6327426 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||| ||||||||||||||||||||| Sbjct 6327425 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 6327387 >seq5357 Length=2195 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||| | | |||||||||| |||||||||| |||||||||||||||||||| Sbjct 86 AAGAAAAAATAAGTAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 145 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 146 CGACGCTCTAACCAACTGAGCTAATGGGCC 175 >seq142 Length=7807734 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||| | | |||||||||| |||||||||| |||||||||||||||||||| Sbjct 1137327 AAGAAAAAATAAGTAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 1137268 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 1137267 CGACGCTCTAACCAACTGAGCTAATGGGCC 1137238 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||| | | |||||||||| |||||||||| |||||||||||||||||||| Sbjct 1138003 AAGAAAAAATAAGTAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 1137944 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 1137943 CGACGCTCTAACCAACTGAGCTAATGGGCC 1137914 Score = 96.9 bits (106), Expect = 2e-15 Identities = 63/69 (91%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 11459 CCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGA 11518 ||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||| Sbjct 1119622 CCCATGAGGGGATCGAACCC-CGACCTTCGCGTTATTAGCACGACGCTCTAATCAACTGA 1119680 Query 11519 GCTAATGGG 11527 ||||||||| Sbjct 1119681 GCTAATGGG 1119689 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261466523647468