Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1782 280 2e-71 seq1986 145 1e-30 seq1803 93.3 7e-15 >seq1782 Length=11839424 Score = 280 bits (310), Expect = 2e-71 Identities = 479/700 (68%), Gaps = 3/700 (0%) Strand=Plus/Plus Query 159 GTACTTAGGTAAGGTCGGATATTTCTTTGATTCCTTTACACAATCAATGAACAGTTTGTA 218 ||| | ||||||||| |||||||||| | | || | ||||||| || ||||| ||||| Sbjct 2077139 GTATTCAGGTAAGGTGGGATATTTCTCTAAATCTTGTACACAACGTATAAACAGATTGTA 2077198 Query 219 TAGTGACAAAACTCTGTCGAACTCAAGCGAATTGATAGGTTCAAAAGTAACTTTNNNNNN 278 || ||||||| | ||| ||||| ||||||| || | ||| |||| | || Sbjct 2077199 TACAGACAAAATTTTGTTAAACTCGAGCGAATCGAGATCGTCATAAGTTATATTTATTTT 2077258 Query 279 NNNNNNNNNNNNNNNNNTGCTAATGACTACTTTCTTGGTATTCTTTACCAATTCCGTGTA 338 | |||| || | ||| || || | | | |||||||| || Sbjct 2077259 ATTTTTGTCGTCATCATTATTAATTACGATTTTTTTACTAATTTCGAATAATTCCGTATA 2077318 Query 339 GAAAGATTTGTCTTGGTCGATAGCAAAATAGGGACGGAACGTCTTTTCACAGATATCAAA 398 || ||| ||| |||| |||||| |||||| ||||| || || ||||||||||||||||| Sbjct 2077319 AAATGATCTGTTTTGGCCGATAGTAAAATAAGGACGAAATGTTTTTTCACAGATATCAAA 2077378 Query 399 CGTGCCTGTCCCAGCTTCGGATGCCTCCAAGTCACCCTCAAAGTGCATAAGGTGGACGAA 458 | | | | | || || | | | | | | | | | ||| | ||| | || || | Sbjct 2077379 CATACTTATACCGTTTTTTGCTT--TACTA-TAATCATTAAAATTCATTAAATGTACATA 2077435 Query 459 GTCATTCAAATGAACTTTCTCCTCAAGAATATCGTCACGCAAAATTCCCTTGTGATTTAA 518 ||||||||| |||| ||| | |||| |||||| ||||| || | || ||||| | Sbjct 2077436 GTCATTCAAGTGAAGTTTTTGTTCAATGTCATCGTCCCGCAACATATCTTTATGATTCAG 2077495 Query 519 CTTTAGGTAATTCAGCTTGTATAGATTAGATGATTTTTCAATTTCACTGACTAGAAAACC 578 || ||| |||| || || | || ||| ||| | |||||||||||| | || || || Sbjct 2077496 TTTCAGGAAATTGAGTTTATTTAAATTGCATGGATGTTCAATTTCACTAATGAGGAATCC 2077555 Query 579 ATCTACAGTCTTGAAGATTTTCTCCAACAAATAATAAATTTTCTTTCTCCGTTTTTGGAt 638 | | | | ||||| ||||| |||||||||||||||| ||||| || | ||| |||| Sbjct 2077556 GTTTGTACTTTTGAATATTTTGTCCAACAAATAATAAACTTTCTCGCTTTGGTTTGGGAT 2077615 Query 639 ttttttCAAAGTCATTACGTAACTTAGTAGTTCTTTTCGTTTCTCGATAGGCTTCAAATC 698 |||||||||| |||| || | || | || || | ||||| | |||| | ||||| Sbjct 2077616 TTTTTTCAAAATCATAACATGTCTAATTATATCCCTACGTTTTCCAATAGATTCTAAATC 2077675 Query 699 TAGATCATAATTGAACCATGTCAAAATTTCAATCATATAGCGCGCTACGCTATAATACCC 758 || |||||||| || | ||| ||||| |||||| | | || | | ||||||| Sbjct 2077676 TAAGTCATAATTTAAAATTTTCAGTATTTCGATCATACAATGAGCCATACCATAATACAT 2077735 Query 759 TCTTAGCCGTTCCTGCTTGTAGTGTTGAGGATCATTTTTAAAAATTCCTGAGGACAATTC 818 ||||| ||||| ||| || | | ||||||| | ||| || || || ||||| || Sbjct 2077736 TCTTAAACGTTCATGCATGAAATTAAGAGGATCGTCTTTGAATATAGACGACGACAACTC 2077795 Query 819 CACGCAGTACCATAACGCAGTTGGTAGCGTTGTGCTTACT 858 ||||||||||| ||||||||||||| | ||| ||||| Sbjct 2077796 GACGCAGTACCACAACGCAGTTGGTAATGATGTTTTTACT 2077835 >seq1986 Length=5217794 Score = 145 bits (160), Expect = 1e-30 Identities = 179/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || |||||||| || || ||||||||| |||| || | || Sbjct 22984 CTTCGTGATAACATCCAGGGCATCACCAAACCGGCCATCCGTCGTTTGGCCCGCAGAGGA 23043 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || ||| | || || |||| |||| ||| | ||| | ||| Sbjct 23044 GGTGTCAAGCGTATCTCCGGTTTGATATACGAGGAGACGCGTGGTGTGCTCAAGGTGTTC 23103 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || || || |||||||| || | ||||| ||| Sbjct 23104 CTCGAGAACGTGATCCGCGACGCGGTCACTTACACAGAGCACGCGAAGAGGAAGACCGTC 23163 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | ||||| | || || || |||| || || ||||||| | || ||||| || Sbjct 23164 ACCGCTATGGACGTTGTATACGCTCTGAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGC 23223 Query 16694 AGTTA 16698 |||| Sbjct 23224 GGTTA 23228 >seq1803 Length=4731946 Score = 93.3 bits (102), Expect = 7e-15 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || || || || ||||| ||| | | |||| | || || ||| Sbjct 293263 CGTGATAACATCCAGGGCATAACAAAACCAGCCATCAGGAGATTGGCGAGACGAGGCGGA 293204 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | | ||||| || |||| ||||| | | | |||||||| | || | Sbjct 293203 GTGAAGAGGATTTCTGGGCTGATCTACGAAGAAACCAGAGGAGTTTTGAAAGTGTTTTTG 293144 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || |||| || ||| || || || || ||||| || | ||||||||||| Sbjct 293143 GAAAATGTAATCCGCGACGCTGTCACGTACACGGAACACGCGAAGAGGAAGACTGTCACG 293084 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||||| ||||||| || ||||| | || || || | | | |||||||| || Sbjct 293083 GCCATGGACGTCGTCTACGCCTTGAAGAGACAGGGACGCACGTTGTATGGTTTCGG 293028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068120520899