Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2594 500 1e-136 seq142 118 1e-21 >seq2594 Length=7326867 Score = 500 bits (554), Expect = 1e-136 Identities = 1177/1757 (67%), Gaps = 36/1757 (2%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||| ||||||| ||| |||||||| || || | ||| | ||||| | |||||| Sbjct 141626 GCAGGTTTAGTACGTAAATAATACATTCCAGTCTTCAAACCCATTTTCCATGCATAAAAA 141567 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || ||| ||| | |||| ||| | || | || | ||| ||||| | || || || Sbjct 141566 TGTATAGACGTCAATTTGCCGTAATTAGGGGCAGCCACATGTATATTGAATGACTGGCTC 141507 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || || ||||| || ||||| ||||||| || | || || || ||| ||| Sbjct 141506 TGATCTATAAATGCTCCTCTATCTGCGGCCATTTGAATAGTTGTTTTGACTGAAATCTCC 141447 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGA 62251 || | ||||||||| || || || | | |||| |||| | |||| || || || Sbjct 141446 CAGACAGTTTTATACAAGTCCCTGATT-TCTTTAGGAATAGCCTCAATATTTTGTATAGA 141388 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| || ||||| || || || || |||| ||| || | | || ||||| Sbjct 141387 TCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATCCCACAAATCTGCTTCTGTTAA 141328 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | | | | | ||| |||| || ||||||||||||||||||| ||||| | ||| Sbjct 141327 ATCCCGCAACAAATGATGATTTACCACTTGAAATTCTCCAGACAGTACTCGTCTTTGGTA 141268 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 ||||||| || | || || | || ||||| || || | ||||||||||| || || Sbjct 141267 AATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTGAGCAGTGGAAGC 141208 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62489 ||| |||||||| || | | | ||| | || || ||||| | ||||| || Sbjct 141207 AGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCC--ATGTTTGGCAATTTTTTCC 141150 Query 62490 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 62549 |||| || ||||| ||||||||| | || |||| Sbjct 141149 TTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTTCCACATCTCATACTGTAAT 141090 Query 62550 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62608 ||||| | ||| | | || | ||| |||| || || ||| || | || || || | Sbjct 141089 ATACCTTGACTAACAGGACTA-CCTTCATAAGTTTCATATACACCATATTTTTCTGCCAA 141031 Query 62609 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62668 ||| ||||| || ||||| ||||| |||||||| ||||| || || | | ||| || | Sbjct 141030 TTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATATTTGTTGATTCAGTTT 140971 Query 62669 --TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62726 | | ||| | | | ||| | ||| | | | ||| | ||| ||||| || Sbjct 140970 AATAGCACTTTC--GTTTTCATAAGGAATGCGCATCAATACAAATGTGTCAGCTAAACCC 140913 Query 62727 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62786 || |||||||| || ||||||||||||||| |||| || | | |||||||| | ||| Sbjct 140912 TGCACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTTTGCTTCTGGCACTGGA 140853 Query 62787 TAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCC 62843 ||| | || | ||| ||||||||||| || || |||||||| || ||| ||| Sbjct 140852 TAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAATT---TTAGTCACTTCC 140796 Query 62844 TTCAGTTTGAGAAAATCAAATCGCCCATCT--ATT-ACAAACATGTTCAAGGCAACAGAT 62900 || || || | ||||| || ||| ||| |||||||| || || |||| ||| Sbjct 140795 TTAAGCTTAATAAAATTGTATGTTTTATCATCATTCACAAACATATTTAACGCAATGGAT 140736 Query 62901 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62960 |||| ||| || || ||| |||| ||| | || | | || || || || | Sbjct 140735 GCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTCAACAATTTCTGTACACAAG 140676 Query 62961 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63020 || || ||||| || || || ||||||| |||||||||||| | ||||| ||||||||| Sbjct 140675 TTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTATTACAGGCATCCTTA 140616 Query 63021 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63080 || || || |||| || |||||||||| || | |||||||| |||||||| | | | Sbjct 140615 TATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCTTTCCATAGTATT 140556 Query 63081 CGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--TCGTATAGTGTATACAATCGTT 63138 |||| || | | | || || | ||| || | || ||| | ||| | | | Sbjct 140555 TGAGCTTTAACTT--GCTTGACATAACGTTTTTCCTGTTCATATTTTTCATAGAGTGCCT 140498 Query 63139 CGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGAC 63197 | || || || |||||| || | | | | ||||||| | |||| || ||||| | | Sbjct 140497 CAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGAGAATCATGAGGGCACATAAGACTC 140439 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || ||| | | | || || ||||||||||| | ||| || ||||| | ||| ||| || Sbjct 140438 CAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCTGGGATCCACAAAGC-ATAGAA 140380 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || ||||| | ||| |||||| || || ||||||||| | ||| | || | | Sbjct 140379 CAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTTTTCAAATCCAAAAATTCGAA 140320 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 ||||| | |||||| || || ||||| | || | |||| || ||||| ||||| || Sbjct 140319 TATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCTCCTGGTCGTTTATTTCCACC 140260 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||||| | ||||| || ||||| || ||||| | |||||| |||| || ||| ||||| Sbjct 140259 TTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAACATAGGAACAACACCATTTGA 140200 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63494 | ||||| || || | |||||| | || | || | ||| | | | | ||| | | Sbjct 140199 AACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTAATGCAATGC-ACATGA-ACA 140142 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || || || || || ||||| ||| | ||||| |||||||| || ||| Sbjct 140141 CCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTTTAAAGTGTCATATATCCCC 140082 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || ||||| ||||| |||| || ||||||||| ||||| || | | ||| Sbjct 140081 TCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGACAACTGAGGTCTTGGGGTT 140022 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 | ||| ||| | || ||| ||||| ||||| |||||||||| | || |||||| Sbjct 140021 GCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATTTTTCAGATAATAAATTGTAT 139962 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 || | ||||| | || ||||| ||| ||||| | | || | ||||||||| Sbjct 139961 GTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAATAGATACTCTCATTAACATA 139902 Query 63735 TGCTGAGGTCTTTCAAC 63751 ||||| ||||| ||||| Sbjct 139901 TGCTGTGGTCTCTCAAC 139885 >seq142 Length=7807734 Score = 118 bits (130), Expect = 1e-21 Identities = 160/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || ||| ||| ||||| ||| || || ||||| ||||| || || | ||| | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||||||| || || ||||||||||| ||||| |||||||| |||| Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33500 | | | | || || || | |||||| || ||||||| | ||||||| || Sbjct 5994892 CGACGATACGTTCACC--AAATGTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTC 5994835 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 ||||||||||| ||||| |||| || || ||||| || || Sbjct 5994834 AGCCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAA 5994793 Score = 100 bits (110), Expect = 4e-16 Identities = 104/134 (78%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 ||||| |||| ||| | | || |||| || | ||| ||||||||||||||||||||| Sbjct 5993919 GTTAGGTTATGTCAACAAGT--TACCTTT-GACAAATCCACTTCTTCCACTGTCCAAAAT 5993863 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACA 33882 ||||| || || || || ||||| ||||| || ||| ||| || |||||||| || ||| Sbjct 5993862 GATGCTTCCGCTTTCTTGTACATTTTCCATATATCAGGATACTGAATTGGGAATATTACA 5993803 Query 33883 AATCTATTTGGATT 33896 |||| ||||||| Sbjct 5993802 AATCGTCTTGGATT 5993789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622886906497880