Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq557 374 8e-99 seq2594 145 7e-30 seq5264 98.7 1e-15 >seq557 Length=1183051 Score = 374 bits (414), Expect = 8e-99 Identities = 923/1376 (67%), Gaps = 53/1376 (4%) Strand=Plus/Minus Query 61890 AAATGACTGTAAAGTTGTGCAATTCGGACGGATGCACTTCGAGTCAGCCGGTCGATGTCG 61949 |||||||||| | | ||||| | |||||||||| || ||| | || || ||| Sbjct 1027125 AAATGACTGTGGAACTCTGCAACGCTGACGGATGCAGCTCTAGTGATCCCACTGACATCG 1027066 Query 61950 TGATCGCAGACACGGACGGCTCTCATCTAGCTCCATTATATTATGAATATCAG-GAATTA 62008 | | ||||| || |||||| ||||| | |||||| | | | | ||| | || Sbjct 1027065 TCGTGGCAGATACCGACGGCAGCCATCTCCCACCATTAGACT-TCACGATCGGAGAGAGG 1027007 Query 62009 AATCAACCGTTCGA---GAC-TCGGGTCAAAAATAAAGTCGTTGCCGCATATTTTGTCGA 62064 ||| |||| ||| | ||| || ||| ||||| |||| || ||||| ||||| Sbjct 1027006 AATAAACCATTCAAACAGACATCTGGT-------AAAGTTGTTGGAGCGTATTTCGTCGA 1026954 Query 62065 ATGGGGCGTTTATCCTAGAAACTTTCCTGTAGATCGAGTGCCTACTCCTAATCTATCGCA 62124 ||||||||| ||||||||||| || || ||||| || ||||||| ||| ||| || | || Sbjct 1026953 ATGGGGCGTCTATCCTAGAAAATTCCCGGTAGACCGCGTGCCTATTCCCAATTTAACCCA 1026894 Query 62125 TGTTCTCTATGGATTTATTCCTATATGCGGCGGCGACGGCATTAACGACAGTCTCAAGAC 62184 | | || || || || || || || ||||| ||||| ||||| ||||||||| | ||| Sbjct 1026893 TTTGCTGTACGGCTTCATCCCAATTTGCGGAGGCGATGGCATCAACGACAGTTTGAAGGA 1026834 Query 62185 CATAACCGGTAGTTTTGAAGCTCTTCAGCGGTCGTGTTCGGGTCGAGACGACTTTAAAGT 62244 || || ||||| ||||| | ||||| ||||| || ||||| ||||| || || Sbjct 1026833 AATCGAAGGCAGTTTCCAAGCTTTGCAGCGATCGTGCAGCGGCCGAGAGGACTTCAAGGT 1026774 Query 62245 GTCGATTCATGACCCGTGGGCTGCCGTCCAGAAACCACAAAAACAAGTAACCGCTTGGAA 62304 ||| || ||||| || ||||| || ||||||||||||| || | | | | ||||| Sbjct 1026773 GTCCATCCATGATCCATGGGCAGCTCTCCAGAAACCACAGAAGGGATTGTCTTCATGGAA 1026714 Query 62305 CGAACCATACAAAGGTAATTTTGGTCAATTGATGGCAGCCAAACTGGCGAATCCTCACAT 62364 ||| |||||||| || || ||||| || |||||| |||| || || ||| || | Sbjct 1026713 CGAGCCATACAAGGGCAACTTTGGCCAGTTGATGATGTTGAAACAAGCTAAGCCTGACCT 1026654 Query 62365 TAAAGTGTTACCTTCGATAGGCGGCTGGACATTATCCGATCCGTTCTTTTATTTTCACGA 62424 ||| | || || || || || || ||||| || | ||||| ||||| | | ||||| Sbjct 1026653 GAAAATCTTGCCATCTATCGGTGGATGGACTTTGGCTGATCCATTCTTCT-TCTTCAC-- 1026597 Query 62425 TGTGGCCAA---ACGCAAGAT--TTTTGTCGATTCCGTCATAGAATTTTTACAGACCTGG 62479 || | || | | |||| ||||| | ||| || | ||| ||| | | |||||| Sbjct 1026596 --TGACAAATCTAAGAGAGATCGGTTTGTAGCTTCAGTTAAAGATTTTCTGGAAACCTGG 1026539 Query 62480 AAATTTTTCGATGGTGTCGACATCGATTGGGAGTTTCCCGGCGGGAAAGGCGCCAATCCC 62539 ||||| || |||||||| || ||||||||||| || || ||||| |||||||| |||||| Sbjct 1026538 AAATTCTTTGATGGTGTTGATATCGATTGGGAATTCCCTGGCGGTAAAGGCGCTAATCCC 1026479 Query 62540 AACGTAGGCGACGTCGAACGCGATCGCGAAACGTACACGATTCTGTTGAGAGATTTACGC 62599 ||| | ||| ||| | || | || |||| | |||| ||| || | || Sbjct 1026478 AACCTCGGC--AGTCCCA-AAGACGGTGATGTGTACGTAAGTCTGATGAAGGAACTCCGT 1026422 Query 62600 GAAGCCCTCGACCGTCTCTCAATCGAAAC-GAATCGAACGTACGAATTGACTAGCGCGAT 62658 || ||| || | ||| ||||| | | ||| ||||| ||||| ||| || Sbjct 1026421 GAGATGCTCAACGAGTTATCAGCTGAAACTGGAAAGAA-ATACGAGCTGACTTCCGCTAT 1026363 Query 62659 CAGCGCCGGCGATGACAAAATTGCCGTAGTCGATTACACTGAAGCGCAAAAATATTTGGA 62718 |||||| || || ||||| || || | |||| ||||| || ||||| |||| Sbjct 1026362 CAGCGCAGGTTGGGATAAAATCCAAGTGGTGAACTACAACGAAGCTCAGAAATACATGGA 1026303 Query 62719 TTATAtttttttAATGACATACGATTTCAAAGGAGCTTGGTCGAATAGCGATTTGGGATA 62778 |||| || || |||| ||||| ||||||||||| ||||| || | |||||| | Sbjct 1026302 CCATATATTCTTCATGAGCTACGACTTCAAAGGAGCCTGGTCAAACGACACTTTGGGCCA 1026243 Query 62779 TCAAACGACTCTGTACGCGCCTTCGTTTAACCCTAAAGAGCATTATACGACCGATTTTGC 62838 ||| ||| || ||||||||||||| | | || || ||| ||| ||||| ||||| | Sbjct 1026242 TCAGACGTCTTTGTACGCGCCTTCATGGAGGCCAAAGGAGACTTACACGACAGATTTCGG 1026183 Query 62839 CG-----TTCGTGCTATGCTCAAGCAAAAAG-TCGAAAACAAAAAGATTATAGTCGGCGT 62892 | ||| || || ||||||| || ||| || |||||| | || || || Sbjct 1026182 TGTTAAATTCCTGTTA-GCTCAAGGTGTGAGTTCG-----AAGAAGATTGTTGTAGGTGT 1026129 Query 62893 GGCCATGTACGGTCGAGGTTGGACCGGCGTCGGTGACTTTGTCGACGAAAATAATCCATT 62952 || ||||| || |||| |||||||| ||| ||| | | ||||||| || Sbjct 1026128 AGCTATGTATGGCAGAGGATGGACCGGTGTCCAGAACT---ACACGGGTGATAATCCTTT 1026072 Query 62953 TTCCGGCACGGCTAAGGGACCGATCAAAGGTACCTGGGAGGACGGAGTCGTCGATTATAG 63012 | || | || | || || ||| ||| | ||| | ||||| || || ||||| || Sbjct 1026071 CACTGGGATCGCCACAGGGCCTTGCAAGGGTTCGTGGCAAGACGGCGTAGTTGATTACAG 1026012 Query 63013 AGAGATTTTTAATTCTTT---TGTGGGTAAAGACGGCATTAATCGTTACGATTCCATCGC 63069 || ||| || | | || || | || | | ||| || || | || Sbjct 1026011 GGATATTGCAAACGAAATAGCTCAAGGGAA--ATGGGAGT-ATCACTATGACAATGTGGC 1025955 Query 63070 AAAAGCGGCATACGTCTTTAATAACGCGACCGGCGATCTCATAACCTACGACAGTCCTCA 63129 |||| | || || |||| || || || || ||| | | || ||||| | | | Sbjct 1025954 GCAAGCCCCTTATGTTTTTAGGAAGGCAACTGGTGATTTGGTTACATACGA-TGACGCGA 1025896 Query 63130 G-TCGGTTCTGGATAAAGCAAAATATGTTTTGGACT-ATAATCTGGGTGGTCTGTTCGCG 63187 | || ||| | || || | ||||| | | ||| | | || | || ||||| |||||| Sbjct 1025895 GATCTGTTATTGAAAAGGGGAAATACG-TAAGGAGTAACAAATTAGGGGGTCTATTCGCG 1025837 Query 63188 TGGGAGATCGATGCTGACAACGGATTGCTTCTAAACGCAATGAACAGCGGTCTCGG 63243 |||||||||||||||||||| || ||||||| |||||||||| ||||| || Sbjct 1025836 TGGGAGATCGATGCTGACAATGGTGATATTCTAAATGCAATGAACATGGGTCTTGG 1025781 >seq2594 Length=7326867 Score = 145 bits (160), Expect = 7e-30 Identities = 700/1096 (64%), Gaps = 28/1096 (3%) Strand=Plus/Minus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || || || || || | || || || ||||| || | ||||| ||||| || || || Sbjct 141650 ACAGTAAACTGGATAGCATTGGCAGCAGGTTTAGTACGTAAATAATACATTCCAGTCTTC 141591 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTA---TAGGTTGGATTG 147230 |||||| ||| ||| | ||| || || || | || ||| || | || Sbjct 141590 AAACCCATTTTCCATGCATAAAAATGTATAGACGTCAA---TTTGCCGTAATTAGGGGCA 141534 Query 147231 GCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATG 147290 |||||| | ||||| || ||||||||||| || | | ||| | ||||||||||| Sbjct 141533 GCCACATGTATATTGAATGACTGGCTCTGATCTATAAATGCTCCTCTATCTGCGGCCATT 141474 Query 147291 TCCAACACTACTTTTTGTTTAATT-TCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTG 147349 | || | | |||| | || | ||||| | || || | | || |||| | | Sbjct 141473 TG-AATAGTTGTTTTGACTGAAATCTCCCAGACAGTTTTATACAAGTCCCTGATTTCTTT 141415 Query 147350 TGGAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATT---TTTATCATGAT 147406 ||||| | ||||||||||||| |||||| || || | |||||| ||| ||||| Sbjct 141414 AGGAATAGCCTCAATATTTTGTATAGATCCATTATTATGAATAATGAGGTTTTTCATGTC 141355 Query 147407 ATCTGTCGA-ATATACGTTGGTGTCTACGAGTTTATCGACGAGATGCTGATTGACCACTT 147465 || | | | || | | ||| || | | | || | ||| ||||| ||||||| Sbjct 141354 TTCATCCCACAAATCTGCTTCTGT-TA--AATCCCGCAACAA-ATGATGATTTACCACTT 141299 Query 147466 GATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGACT 147525 || | || || ||||| |||| || | ||| | |||| || || ||||| || || | Sbjct 141298 GAAATTCTCCAGACAGTACTCGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATT 141239 Query 147526 CGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGAAT 147585 | |||||||| || || || ||||| | || || ||||| || || | | ||||| Sbjct 141238 CATTGTTACCAAGTATTTGAGCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAAT 141179 Query 147586 TGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCATTCG 147645 |||| | || || | || |||| | ||| | | | ||| | ||||||||| | | Sbjct 141178 TGCGCAGTCCATGTTTGGCAATTTTTTCCTTTAATACTTGCCAATCCCAAAGATCTGTGG 141119 Query 147646 ATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCATCGT 147705 ||| | ||||||| ||| ||||||| | || ||| |||| || || || | Sbjct 141118 GA--GTTT-TGTTCCACATCTCATACTGTAATATACCTTGACTAACAGGACTACCTTCAT 141062 Query 147706 AAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGCACCATA 147763 ||| || ||| || | || || | |||| ||| | ||| | |||||||| Sbjct 141061 AAGTTTCATATACACCATATTTTTCTGCCAATTCGCAACT--GGCTTCTAAAGCACCATA 141004 Query 147764 ATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTAGGGCAT 147823 |||||||||||| | || | || ||| | | |||| || | | || || || || Sbjct 141003 ATAAATAGTTTCAAATATTTGTTGATTCAGTTTAATAGCACTTTCGTTTTCATAAGGAAT 140944 Query 147824 ATCCAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCGGTGTCT 147883 || | | || || || || | || || | ||| || || || |||| ||||| Sbjct 140943 GCGCATCAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCT 140884 Query 147884 GAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTTTATTGAG 147943 | ||| ||| | || | || |||||||| || | || ||||||||||| || Sbjct 140883 CATATTTGATTTCTTTGCTTCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAG 140824 Query 147944 ATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCGAAGCTTTTAAACTG 148003 || | || || | | ||| || | | ||| |||| | | | ||||| | Sbjct 140823 GTTCTGAGTGACAATTTTAGTCACTTCCTTAAGCTTAATAAAATTGTATGTTTTA---TC 140767 Query 148004 TTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTTTC-TCGAT 148062 | ||| |||| |||||| ||||| || ||||| || ||||| || ||||| || Sbjct 140766 ATCATTCACAAACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGC 140707 Query 148063 TGTCGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCGtttt 148122 | | | || | ||| ||||| | ||||| |||||| ||| ||| |||| Sbjct 140706 AGATG-TGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTT 140648 Query 148123 tttGATTATTTTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCGA 148182 | |||||| | || | ||| | ||| ||| | | ||| ||||| | || || || | Sbjct 140647 TCTGATTACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAA 140588 Query 148183 CTTGAGTCTCAATAAT 148198 |||| | ||| ||||| Sbjct 140587 CTTGTGCCTCTATAAT 140572 >seq5264 Length=5978571 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||||||| | |||||| | ||| ||||| | Sbjct 3328367 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACCATCACCCTTGAAGTAGAACCTTCA 3328426 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || |||||| ||||||||||| || || || || || Sbjct 3328427 GACACCATAGAGAATGTGAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 3328486 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | | |||||||| | ||||||| | | | | |||||| ||| Sbjct 3328487 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCTTGTCCGACTACAAC 3328546 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || ||||| ||||| ||||||| || ||| | || | || |||| Sbjct 3328547 ATCCAGAAAGAGTCTACCCTCCATCTTGTACTGCGTCTCCGTGGTGGAA 3328595 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||||||| | |||||| | ||| ||||| | Sbjct 3328823 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTTGAAGTAGAACCTTCA 3328882 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || |||||| ||||||||||| || || || || || Sbjct 3328883 GACACCATAGAGAATGTGAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 3328942 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | | |||||||| | ||||||| | | | | |||||| ||| Sbjct 3328943 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCTTGTCCGACTACAAC 3329002 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || ||||| ||||| ||||||| || ||| | || | || |||| Sbjct 3329003 ATCCAGAAAGAGTCTACCCTCCATCTTGTACTGCGTCTCCGTGGTGGAA 3329051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| ||| | || || | || | ||| || Sbjct 3329963 ATGCAGATATTTGTTAAAACCCTGACTGGTAAAACCATTACTTTGGAGGTCGAACCATCT 3330022 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||| ||| ||||| || || || ||||| |||||| Sbjct 3330023 GACACAATTGAAAATGTCAAAGCAAAAATTCAAGACAAGGAGGGCATCCCTCCAGATCAA 3330082 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| |||| | || ||||| || ||||||| | | | ||||| ||| Sbjct 3330083 CAGAGACTTATTTTTGCTGGTAAACAGCTGGAAGATGGACGTACTCTTTCAGACTACAAC 3330142 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || ||||||||||| || | ||| |||| || |||| Sbjct 3330143 ATCCAAAAAGAATCCACCTTGCATTTGGTACTCCGACT 3330180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478616071462960