Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2594 179 1e-39 >seq2594 Length=7326867 Score = 179 bits (198), Expect = 1e-39 Identities = 569/871 (65%), Gaps = 16/871 (2%) Strand=Plus/Plus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 ||||||| | || ||||||||||||||| | || ||||||| || ||| | ||| Sbjct 139883 TTGTTGAGAGACCACAGCATATGTTAATGAGAGTATCTATTGGAATACATGGTGAAGATA 139942 Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGC 363562 ||||||| || || | ||||| || | || || || || ||||| | | Sbjct 139943 TTGATGCTGCTATCAACACATACAATTTATTATCTGAAAAATATTTTACCCACGCAAGTC 140002 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 |||| | | ||||| ||| | | || ||| ||||||| || |||||| | || Sbjct 140003 CAACTCTCTTTGCTGCTGCAACCCCAAGACCTCAGTTGTCTTCCTGTTTTCTTGTTGCAA 140062 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 |||| || || ||| ||||| || | |||||| | ||| | ||||| | ||||| | Sbjct 140063 TGAAAGATGACAGCATTGAGGGGATATATGACACTTTAAAGCAATGTGCATTGATTTCAA 140122 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACAT 363740 || || || || |||||||| || || || || || | ||| | || || || Sbjct 140123 AGTCAGCTGGTGGTATTGGTGT-TC-ATGTGCATTGCATTAGAGCAAAAGGCACCTATAT 140180 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 | || ||| ||| || ||||| | ||||| ||| | ||||| | |||| || Sbjct 140181 TGCTGGAACAAATGGAGTTTCAAATGGTGTTGTTCCTATGTTGCGTGTTTACAACAACAC 140240 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 ||| || || || || || |||||| || || ||| || |||||| | || | || Sbjct 140241 TGCCAGATATGTTGATCAAGGTGGAAATAAACGACCAGGAGCCTTTGCTGTCTACTTAGA 140300 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACG---GGAAAAGA 363917 |||| ||||| ||||| || || ||| | || | |||||| | || ||||| Sbjct 140301 GCCTTGGCATGCAGATATATTCGAATTTTTGGATTT---GAAAAAGAATCATGGCAAAGA 140357 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 |||| | | ||| | || ||||||||||| | ||| | | || |||||||| || Sbjct 140358 GGAAGTCAGAGCAAGAGAACTGTTCTATGCTTTGTGGATCCCAGATTTATTTATGAAACG 140417 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 ||| ||| | | | | ||| || | ||||| || || | ||| || || | || Sbjct 140418 CGTTGAGAAAAATGAAGACTGGAGTCTTATGTGCCCTCATGATTCTCCTGGACTAGCAGA 140477 Query 364038 -TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT- 364095 ||| |||||||| || | || || || || ||||| |||||| ||| ||| | | Sbjct 140478 CTGT-TGGGGTGAGGAATTTGAGGCACTCTATGAAAAATATGAACAGGA--AAAACGTTA 140534 Query 364096 CGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 || ||| | || || || | |||||| || || || || | || |||| || Sbjct 140535 TGTCAAGCAAGTTAAAGCTCAAATACTATGGAAAGCTATTATAGAGGCACAAGTTGAAAC 140594 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 || ||||| |||||| | || || ||| | || || | ||| || ||| | | | Sbjct 140595 TGGCACACCATATATGCTATATAAGGATGCCTGTAATAGAAAGAGTAATCAGAAAAATTT 140654 Query 364215 TGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 || |||||| || |||||| | ||||| || ||| |||| ||||| || | || || Sbjct 140655 GGGCACAATTAAGTGCAGCAACTTGTGTACAGAAATTGTTGAGTACACATCTGCAGATGA 140714 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCG 364305 || || || || || | || || || ||| Sbjct 140715 AACAGCAGTGTGCAATTTGGCATCCATTGCG 140745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303224297955026