Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq557 298 5e-76 seq381 172 5e-38 seq5264 127 2e-24 >seq557 Length=1183051 Score = 298 bits (330), Expect = 5e-76 Identities = 599/879 (68%), Gaps = 17/879 (2%) Strand=Plus/Minus Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236 |||||||| || ||||||||||| || | || ||||| ||||| ||||| | Sbjct 1026967 GCGTATTTCGTCGAATGGGGCGTCTATCCTAGAAAATTCCCGGTAGACCGCGTGCCTATT 1026908 Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 |||||||| | ||| || ||||||| || || || |||||||| ||||| || | ||| Sbjct 1026907 CCCAATTTAACCCATTTGCTGTACGGCTTCATCCCAATTTGCGGAGGCGATGGCATCAAC 1026848 Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354 || | | || || | || |||||||| | || |||| || ||||||| |||| Sbjct 1026847 GA--CAGTTTGAAGGAAATCGAAGGCAGTTTCCAAGCTTTGCAGCGATCGTGCAGCGGCC 1026790 Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414 | | ||||| ||||| |||| || || || ||||| || | || ||||| ||||||| Sbjct 1026789 GAGAGGACTTCAAGGTGTCCATCCATGATCCATGGGCAGCTCTCCAGAAACCACAGAAGG 1026730 Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474 | ||||| | |||||||| || ||||| |||||||||||||| |||||| | || Sbjct 1026729 GATTGTCTTCATGGAACGAGCCATACAAGGGCAACTTTGGCCAGTTGATGATGTTGAAAC 1026670 Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCT 32534 || || ||| || | ||||| || |||||||| || || ||||| ||| | ||||| | Sbjct 1026669 AAGCTAAGCCTGACCTGAAAATCTTGCCATCTATCGGTGGATGGACTTTGGCTGATCCAT 1026610 Query 32535 TTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTTT 32593 | | | || | ||| ||| || | | |||||| | ||| || ||||| ||| Sbjct 1026609 TCT-TCTTCTTCACTGACAAATCTAAGAGAGATCGGTTTGTAGCTTCAGTTAAAGATTTT 1026551 Query 32594 TTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCAAA 32653 | | |||||||||||||| || || || || |||||||| ||||| ||||| ||| Sbjct 1026550 CTGGAAACCTGGAAATTCTTTGATGGTGTTGATATCGATTGGGAATTCCCTGGCGGTAAA 1026491 Query 32654 GGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTGTTA 32713 || || || || ||||| | | |||| | |||| | | | || | Sbjct 1026490 GGCGCTAATCCCAACCTCGG---CAGTCCCAAAGACGGTGATGTGTACGTAAGTCTGATG 1026434 Query 32714 CAAGAATTGCGTTCTATGCTGGACGACCT-TCAATTGCAAACGGGCAAAACGTACGAGTT 32772 | ||| | ||| ||||| |||| | ||| || |||| || || | |||||| | Sbjct 1026433 AAGGAACTCCGTGAGATGCTCAACGAGTTATCAGCTG-AAACTGGAAAGAAATACGAGCT 1026375 Query 32773 GACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCCGCGCA 32832 |||| ||| || || || || || ||||| |||||| | || | | || || Sbjct 1026374 GACTTCCGCTATCAGCGCAGGTTGGGATAAAATCCAAGTGGTGAACTACAACGAAGCTCA 1026315 Query 32833 AAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCTAACAC 32892 || ||| | || | ||||| ||||||| |||||||| ||||| || ||||| ||| Sbjct 1026314 GAAATACATGGACCATATATTCTTCATGAGCTACGACTTCAAAGGAGCCTGGTCAAACGA 1026255 Query 32893 CGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTGTACAC 32952 | ||||||| ||||||| |||||||||| || |||| || | || ||||| Sbjct 1026254 CACTTTGGGCCATCAGACGTCTTTGTACGCGCCTTCATGGAGGCCAAAGGAGACTTACAC 1026195 Query 32953 CACAGATCACGCTGTTAAAT---TGTTAACAAGTCAAGGTGTAGCTTCTTACAAAATCAT 33009 |||||| || |||||||| ||||| | ||||||||| ||| | || || | Sbjct 1026194 GACAGATTTCGGTGTTAAATTCCTGTTAGC---TCAAGGTGTGAGTTCGAAGAAGATTGT 1026138 Query 33010 TGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048 ||| || | || ||||| || | || ||||| || || Sbjct 1026137 TGTAGGTGTAGCTATGTATGGCAGAGGATGGACCGGTGT 1026099 >seq381 Length=8194978 Score = 172 bits (190), Expect = 5e-38 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 109222 CCCGTGCATCCCAAATACGCAACGGAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCT 109281 |||| ||||| ||||||||| | || | |||||||| ||| ||| |||||| Sbjct 1460209 CCCGCCCATCCGGAATACGCAAACATCGCGGCCAGGTTGCGCACCTTTAAAGACTGGCCT 1460150 Query 109282 CGTGGTTTGAAACAGCAACCCGATAAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAG 109341 ||| || || ||| |||| || | ||||||||||||| ||||||||||| ||||| Sbjct 1460149 CGTAGTATGCCCCAGAAACCAGAAGATTTAGCCGAGGCCGGCTTTTATTACACCGGCCAA 1460090 Query 109342 GGCGATAAAACCAAATGTTTTTATTGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGAT 109401 ||||| || ||||| |||| ||| |||||||| || | ||||||||||| ||| || Sbjct 1460089 GGCGACAAGACCAAGTGTTATTACTGTGACGGAGGACTCAAAGACTGGGAAAAGGATGAC 1460030 Query 109402 GAGCCGTGGAAACTGCACGCGCGTTGGTTTGACCGTTGCCCTTACGTGTTGCTTGTTAAG 109461 | |||||| | | ||| || ||||||||||||||||| ||||| | || || || Sbjct 1460029 GTACCGTGGGAGCAGCATGCCCGTTGGTTTGACCGTTGTTACTACGTATACCTAGTAAAA 1459970 Query 109462 GGTCGAGATTATGTGCAAAA 109481 || || ||||||||| |||| Sbjct 1459969 GGACGCGATTATGTGAAAAA 1459950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 109047 CGGATTTTATTATTTGGGTCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAAAT 109106 ||| ||||| |||||||| ||||||||| | || || |||||||||||||| || Sbjct 1460444 CGGTTTTTACTATTTGGGGAAAAATGACGAAGTGAGATGTGCTTTTTGCAAAGTGGAGAT 1460385 Query 109107 AATGCGTTGGCTTGAGGGTGACGACCCAGCGGTTGACCATAAAAGATTAGCGCCACAGTG 109166 ||||| ||| | ||||| ||||| ||||| || ||| | ||| ||||||||||| Sbjct 1460384 TATGCGGTGGATGGAGGGCGACGATCCAGCCAAAGATCATCAGCGATGGGCGCCACAGTG 1460325 Query 109167 TCC 109169 ||| Sbjct 1460324 TCC 1460322 >seq5264 Length=5978571 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || || || |||||||| ||||| | ||| |||| | Sbjct 3786186 AATGCAAATTTTTGTTAAGACTCTGACTGGAAAAACTATTACTTTAGAAGTGGAGCCTTC 3786245 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | | || ||| |||||| ||||| || || |||| |||||| Sbjct 3786246 AGATACTATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAGGGTATCCCTCCTGATCA 3786305 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| |||| ||| || |||||||||||||||| || | |||||||||| Sbjct 3786306 GCAGAGACTCATTTTTGCTGGGAAACAATTAGAAGATGGACGCACTCTTTCCGATTATAA 3786365 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| |||||| | || | || ||| | | || ||||| Sbjct 3786366 TATTCAGAAAGAATCTACTCTTCACCTAGTATTGCGTCTCCGTGGAGG 3786413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || | || || ||||| || || | || |||| || Sbjct 3785959 ATGCAAATTTTCGTCAAGACATTGACCGGCAAAACTATCACATTAGAGGTGGAGCCCTCG 3786018 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | | || || |||||| || ||||||||| | ||| ||| ||| Sbjct 3786019 GATACTATTGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCCCCTGACCAG 3786078 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGAT-GAC-AAAACCATGGCCGATTATA 115463 || || || || | || || ||||| |||||||| ||| | || || | || || | Sbjct 3786079 CAGAGGCTAATATTCGCAGGTAAACAGCTAGAAGATGGACGCACACTAT--CTGACTACA 3786136 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||||| || || ||| | ||| | || || ||||| | ||||||| Sbjct 3786137 ACATTCAAAAGGAATCCACTTTGCATTTAGTTTTACGATTGAGGGGAGGAA 3786187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| || || | ||||| ||||||||||| | ||| || | Sbjct 3328136 AAAATGCAGATTTTTGTTAAGACATTGACGGGTAAAACCATTACTTTGGAAGTAGAACCT 3328195 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| || ||| | | |||||| ||||| || ||||||||| | ||| |||| Sbjct 3328196 TCCGATACCATTGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGAT 3328255 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| | || || | ||| || || || || ||||| | || | | || ||| Sbjct 3328256 CAGCAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAAGACGGTCGCACACTTTCTGACTAT 3328315 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || |||||||| || || ||| |||| |||| ||| Sbjct 3328316 AATATTCAAAAGGAATCGACTCTACACTTGGTATTG 3328351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| ||||| ||||| ||||| ||||| ||| | ||| || | Sbjct 3329734 AATGCAAATCTTTGTTAAAACTCTCACTGGAAAGACCATCACCCTTGAAGTTGAACCTTC 3329793 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | ||||| ||| || || ||||| || |||| ||||| Sbjct 3329794 TGACACCATAGAAAATGTAAAGGCAAAGATACAGGACAAAGAGGGAATCCCACCAGATCA 3329853 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | |||| || || || ||||||||||||| || | |||| || || Sbjct 3329854 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACTTTATCCGACTACAA 3329913 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| ||||| || || | ||| | || | | |||||||| || Sbjct 3329914 CATTCAGAAAGAATCGACGTTGCATTTAGTTCTTCGCTTGCGAGGTGG 3329961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || || || ||||||||||| | || || ||| | Sbjct 3329963 ATGCAGATATTTGTTAAAACCCTGACTGGTAAAACCATTACTTTGGAGGTCGA-ACCATC 3330021 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || ||| ||||||| || || || ||| |||| ||||| Sbjct 3330022 TGACACAATTGAAAATGTCAAAGCAAAAATTCAAGACAAGGAGGGCATCCCTCCAGATCA 3330081 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || |||||||||| ||| || ||||| | ||||||| || | | || || || Sbjct 3330082 ACAGAGACTTATTTTTGCTGGTAAACAGCTGGAAGATGGACGTACTCTTTCAGACTACAA 3330141 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| |||||||| || || | ||| |||| Sbjct 3330142 CATCCAAAAAGAATCCACCTTGCATTTGGT 3330171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425303861217160