Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq557 315 6e-81 seq5264 114 1e-20 seq6227 102 7e-17 >seq557 Length=1183051 Score = 315 bits (348), Expect = 6e-81 Identities = 800/1198 (67%), Gaps = 43/1198 (4%) Strand=Plus/Plus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||| ||||| || | ||| ||||||||||| || || ||||| || || | ||| Sbjct 1025790 ATGTTCATTGCATTTAGAATATCACCATTGTCAGCATCGATCTCCCACGCGAATAGACCC 1025849 Query 95889 CCTAACTTGTTTTGTTCC--ACATATCGACCTTTAGCTATAACAGAATCAACACTATCAT 95946 ||||| ||||| ||| || ||| || || | |||||||| | ||| | Sbjct 1025850 CCTAATTTGTTAC--TCCTTACGTATTTCCCCTTTTCAATAACAGATCTCGCGTCATCGT 1025907 Query 95947 ATGAAATTAAATCGCCTTTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCAA 96006 ||| || ||||| || | | || |||||| || | ||||| || || |||||| Sbjct 1025908 ATGTAACCAAATCACCAGTTGCCTTCCTAAAAACATAAGGGGCTTGCGCCACATTGTCAT 1025967 Query 96007 ATTTAACAATATATTTG--TT----TATTTCGTTTTTGATTTGGCGATAATCAACAACGC 96060 | | | |||| || |||||||||| || | | |||||||| |||| Sbjct 1025968 AGTGATACTCCCATTTCCCTTGAGCTATTTCGTTTGCAATATCCCTGTAATCAACTACGC 1026027 Query 96061 CATCTTCCCAAGTGCCC--GAAACGGGCCCGTTACTACTTCCCAAAAAATAG-TTATCGT 96117 | |||| ||| | ||| | || || || || | | ||||| || | ||||| Sbjct 1026028 CGTCTTGCCACGAACCCTTGCAA-GGCCCTGTGGCGA--TCCCAGTGAAAGGATTATCAC 1026084 Query 96118 TTTCGTAATTTGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTT 96177 ||| || || || ||||| || | || ||||| || || || |||| ||| | Sbjct 1026085 CCGTGTAGTTCTGGACACCGGTCCATCCTCTGCCATACATAGCTACACCTACAACAATCT 1026144 Query 96178 TGCGCGGGTCCACGCCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGCT 96237 | || ||| |||||| | || |||||||| | || || |||| || Sbjct 1026145 TCTTCGAACTCACACCTTGAGCTAACAGGAATTTAACACCGAAATCTGTCGTGTAAGTCT 1026204 Query 96238 CGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACC 96297 | ||||| |||| |||||||||| | || || | |||||| |||||||| Sbjct 1026205 CCTTTGGCCTCCATGAAGGCGCGTACAAAGACGTCTGATGGCCCAAAGTGTCGTTTGACC 1026264 Query 96298 ACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGT 96357 | || ||||| || ||||||||||||| ||||| | ||| | | | || || || ||| Sbjct 1026265 AGGCTCCTTTGAAGTCGTAGCTCATGAAGAATATATGGTCCATGTATTTCTGAGCTTCGT 1026324 Query 96358 CGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACG 96417 ||| || || || ||||| || || || ||||| || |||| |||||| Sbjct 1026325 TGTAGTTCACCACTTGGATTTTATCCCAACCTGCGCTGATAGCGGAAGTCAGCTCGTATT 1026384 Query 96418 TTTTGCCCGTTTGCAGTTGC-AACTCGTCTAACATCACGCGCAATTCCTTTAATAGAATG 96476 | || || |||| ||| || ||||||| | |||| | || | |||||| | ||| | Sbjct 1026385 TCTTTCCAGTTT-CAGCTGATAACTCGTTGAGCATCTCACGGAGTTCCTTCATCAGACTT 1026443 Query 96477 TTGTACGTGTCAGCGTCGCGCTCTTTGT---TGCCGAGCGTCGGGTTGGCGCCTTTACCG 96533 |||| ||| |||| |||| ||||||| | || || |||||||||||| Sbjct 1026444 ACGTACACATCACCGTC------TTTGGGACTGCCGAGGTTGGGATTAGCGCCTTTACCG 1026497 Query 96534 CCCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCT 96593 || || |||||||| ||||| || || || || || |||||||| | || ||| ||| Sbjct 1026498 CCAGGGAATTCCCAATCGATATCAACACCATCAAAGAATTTCCAGGTTTCCAGAAAATCT 1026557 Query 96594 CTGACGGAGTCTACAAACACG--CGCCGTT---TTTCCGCGTC-GTGCATGTAATAGAAC 96647 | || || |||||||| || | | || ||| ||| ||| | | | |||| Sbjct 1026558 TTAACTGAAGCTACAAAC-CGATCTCTCTTAGATTT----GTCAGTGAA-GAAGAAGAAT 1026611 Query 96648 GGGTCGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGT 96707 || || | || ||||| || |||||||| |||| ||||| |||| || ||||| || Sbjct 1026612 GGATCAGCCAAAGTCCATCCACCGATAGATGGCAAGATTTTCAGGTCAGGCTTAGCTTGT 1026671 Query 96708 TTGGCCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCC 96767 || | ||||||||| ||||||||||| ||||| ||||||||||| | ||||| ||| Sbjct 1026672 TTCAACATCATCAACTGGCCAAAGTTGCCCTTGTATGGCTCGTTCCATGAAGACAATCCC 1026731 Query 96768 TTTTGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGG 96827 || || ||||| || | || ||||| || || || || | || || || || ||| Sbjct 1026732 TTCTGTGGTTTCTGGAGAGCTGCCCATGGATCATGGATGGACACCTTGAAGTCCTCTCGG 1026791 Query 96828 CCCTGGCAAGAGCGTTGCAGCGCTTCAAAACTACC--GGGTATGGTTTTAAGGGCATCGT 96885 || ||| || || |||| |||| ||||| || | | | || || | |||| Sbjct 1026792 CCGCTGCACGATCGCTGCAAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTG--TCGT 1026849 Query 96886 TAAGGCCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCA 96945 | | ||| ||||| || ||||| || || || ||||||| |||||| | || ||||| | Sbjct 1026850 TGATGCCATCGCCTCCGCAAATTGGGATGAAGCCGTACAGCAAATGGGTTAAATTGGGAA 1026909 Query 96946 GCGGCACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 ||||| ||| ||||| || || | | ||| ||||||||||| || |||||||| Sbjct 1026910 TAGGCACGCGGTCTACCGGGAATTTTCTAGGATAGACGCCCCATTCGACGAAATACGC 1026967 >seq5264 Length=5978571 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||| | ||| || || ||||| || || ||||||||||||| | Sbjct 3328593 CCACCACGGAGACGCAGTACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAC 3328534 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| |||||||| ||| | || | ||||| ||||| || Sbjct 3328533 AAGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 3328474 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || ||||| |||||| | | | ||||| || || Sbjct 3328473 ATGCCTTCTTTGTCTTGGATCTTTGC--CTTCACATTCTCTATGGTGTCTGAAGGTTCTA 3328416 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||||||||| || || ||||| ||||| |||||||| Sbjct 3328415 CTTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTCACAAAGATCTGCAT 3328367 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||| | ||| || || ||||| || || ||||||||||||| | Sbjct 3329049 CCACCACGGAGACGCAGTACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAC 3328990 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| |||||||| ||| | || | ||||| ||||| || Sbjct 3328989 AAGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 3328930 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || ||||| |||||| | | | ||||| || || Sbjct 3328929 ATGCCTTCTTTGTCTTGGATCTTTGC--CTTCACATTCTCTATGGTGTCTGAAGGTTCTA 3328872 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||||||||| || || ||||| ||||| |||||||| Sbjct 3328871 CTTCAAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATCTGCAT 3328823 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || || |||||||| || ||||||||||||| | Sbjct 3329733 CCACCACGGAGACGCAGAACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3329674 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||||||||| || ||| |||| | |||||| ||||| || Sbjct 3329673 AAGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 3329614 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| || | | |||||| | | | ||||| ||||| | Sbjct 3329613 ATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATGGTGTCAGAAGGCTCAACT 3329554 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || || || || ||||| || ||||| ||||| Sbjct 3329553 TCCAGAGTAATGGTCTTACCAGTAAGGGTTTTCACGAAAATTTGCAT 3329507 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||||| ||||| || ||||| ||||||||||| | | || | || Sbjct 3330174 AGTACCAAATGCAAGGTGGATTCTTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCATCT 3330115 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||||| || ||| ||||||| | |||||| || ||| | |||||| ||||| Sbjct 3330114 TCCAGCTGTTTACCAGCAAAAATAAGTCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCT 3330055 Query 16844 GCAATTTGCTGC-TTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||||| ||| || || | | | ||||| || || |||| || ||||| Sbjct 3330054 TGAATTT-TTGCTTTGACATTTTCAATTGTGTCAGATGGTTCGACCTCCAAAGTAATGGT 3329996 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || ||||| ||||| ||||| |||||||| Sbjct 3329995 TTTACCAGTCAGGGTTTTAACAAATATCTGCAT 3329963 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| ||| || || |||||||| || ||||| ||||| | | Sbjct 3329277 CCACCACGGAGACGCAAAACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAC 3329218 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | |||||| || || | || | ||||| ||||| || Sbjct 3329217 AAGGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 3329158 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || ||||| |||||| | | | || || || ||| Sbjct 3329157 ATTCCCTCTTTGTCCTGGATTTTTGC--CTTCACATTTTCTATGGTATCAGAAGGTTCCA 3329100 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | |||||| |||||||| || || ||||| || || ||||||||| Sbjct 3329099 CTTCAAGGGTGATTGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCATT 3329050 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 16732 ATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC----TCCA 16787 ||||| ||||| |||||||| ||||||||||| | || || | |||||| || | Sbjct 3786162 ATGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAG--ATAGTGT--GCGTCCATCTTCTA 3786107 Query 16788 ATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA 16847 ||||| || || | || |||| ||| ||||| || | ||| |||||||| || Sbjct 3786106 GCTGTTTACCTGCGAATATTAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGAA 3786047 Query 16848 TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTC 16907 ||| |||||| | | | ||| || ||||||| || | ||||| ||||| | Sbjct 3786046 TTTTAGCCTTCACATTTTCAATAGTATCCGAGGGCTCCACCTCTAATGTGATAGTTTTGC 3785987 Query 16908 CGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || ||||| ||||| ||||| Sbjct 3785986 CGGTCAATGTCTTGACGAAAATTTGCAT 3785959 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||||| || || || || ||||| || || ||||| || | Sbjct 3784361 CCACCTCGGAGACGCAGTACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAATCAGAA 3784302 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| || ||||| ||| | || | || || ||||| ||| Sbjct 3784301 AGTGTTCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 3784242 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| || || | | | ||| || ||||| Sbjct 3784241 ATGCCTTCTTTGTCTTGGATCTTAGCT--TTTACATTCTCAATAGTATCAGATGGCTCGA 3784184 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| ||||||| |||||||||||||||||||| Sbjct 3784183 CCTCCAACGTAATAGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 3784135 >seq6227 Length=4744074 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 ||||||||||||||||| || |||| || |||||| | || |||| ||||||||| Sbjct 4519065 GGCGGCGTGGGGCTGAACCTGTGCGGCGCCAGCCACCTGCTGCTGCTGGACCCGCACTGG 4519006 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGCGCAA 29459 ||||||||| | ||| ||| ||||||| ||||||| |||| |||| ||||| || Sbjct 4519005 AACCCGCAGCTCGAGGAGCAAGCGCAGGACCGCATCTACCGCGTGGGGCAGCGGAA 4518950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405049772731570