Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2594 500 1e-136 seq142 109 7e-19 >seq2594 Length=7326867 Score = 500 bits (554), Expect = 1e-136 Identities = 1177/1757 (67%), Gaps = 36/1757 (2%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| ||||||| ||| |||||||| || || | ||| | ||||| | |||||| Sbjct 141626 GCAGGTTTAGTACGTAAATAATACATTCCAGTCTTCAAACCCATTTTCCATGCATAAAAA 141567 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || ||| ||| | |||| ||| | || | || | ||| ||||| | || || || Sbjct 141566 TGTATAGACGTCAATTTGCCGTAATTAGGGGCAGCCACATGTATATTGAATGACTGGCTC 141507 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || ||||| || ||||| ||||||| ||| | || || || ||| ||| Sbjct 141506 TGATCTATAAATGCTCCTCTATCTGCGGCCATTTGAATAGTTGTTTTGACTGAAATCTCC 141447 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGA 62106 || | ||||||||| || || || | | |||| |||| | |||| || || || Sbjct 141446 CAGACAGTTTTATACAAGTCCCTGATT-TCTTTAGGAATAGCCTCAATATTTTGTATAGA 141388 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 |||| || ||||| || || || || |||| ||| || | | || ||||| Sbjct 141387 TCCATTATTATGAATAATGAGGTTTTTCATGTCTTCATCCCACAAATCTGCTTCTGTTAA 141328 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62226 | | | | | ||| |||| || ||||||||||||||||||| ||||| | ||| Sbjct 141327 ATCCCGCAACAAATGATGATTTACCACTTGAAATTCTCCAGACAGTACTCGTCTTTGGTA 141268 Query 62227 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62286 ||||||| || | || || | || ||||| || || | ||||||||||| || || Sbjct 141267 AATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTGAGCAGTGGAAGC 141208 Query 62287 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62344 ||| |||||||| || | | | ||| | || || ||||| | ||||| || Sbjct 141207 AGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCC--ATGTTTGGCAATTTTTTCC 141150 Query 62345 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 62404 |||| || ||||| ||||||||| | || |||| Sbjct 141149 TTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTTCCACATCTCATACTGTAAT 141090 Query 62405 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 ||||| | ||| | | || | ||| |||| || || ||| || | || || || | Sbjct 141089 ATACCTTGACTAACAGGACTA-CCTTCATAAGTTTCATATACACCATATTTTTCTGCCAA 141031 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 ||| ||||| || ||||| ||||| |||||||| ||||| || || | | ||| || | Sbjct 141030 TTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATATTTGTTGATTCAGTTT 140971 Query 62524 --TTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 62581 | || ||| | | | ||| | ||| | | | ||| | ||| ||||| || Sbjct 140970 AATAGCACTTTC--GTTTTCATAAGGAATGCGCATCAATACAAATGTGTCAGCTAAACCC 140913 Query 62582 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62641 || |||||||| || ||||||||||||||| |||| || | | |||||||| | ||| Sbjct 140912 TGCACACCAATCCCAATAGGTCTATGTCTCATATTTGATTTCTTTGCTTCTGGCACTGGA 140853 Query 62642 TAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCC 62698 ||| | || | ||| ||||||||||| || || |||||||| || ||| ||| Sbjct 140852 TAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAATT---TTAGTCACTTCC 140796 Query 62699 TTCAGTTTGAGAAAATCAAATCGCCCATCT--ATT-ACAAACATGTTCAATGCAACAGAT 62755 || || || | ||||| || ||| ||| |||||||| || || |||| ||| Sbjct 140795 TTAAGCTTAATAAAATTGTATGTTTTATCATCATTCACAAACATATTTAACGCAATGGAT 140736 Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815 |||| ||| || || ||| |||| ||| | || | | || || || || | Sbjct 140735 GCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTCAACAATTTCTGTACACAAG 140676 Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875 || || ||||| || || || ||||||| |||||||||||| | ||||| ||||||||| Sbjct 140675 TTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTTTCTATTACAGGCATCCTTA 140616 Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 62935 || || || |||| || |||||||||| || | |||||||| |||||||| | | | Sbjct 140615 TATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTATAATAGCTTTCCATAGTATT 140556 Query 62936 CGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTT 62993 |||| || | | | || || | ||| || | || ||| | ||| | | | Sbjct 140555 TGAGCTTTAACTT--GCTTGACATAACGTTTTTCCTGTTCATATTTTTCATAGAGTGCCT 140498 Query 62994 CGAACTCGTCTCCCCAAACATTGTCC-AGTCCAGGACATTCATCCGGACACATCAACGAC 63052 | || || || |||||| || | | | ||||||||| | |||| || ||||| | | Sbjct 140497 CAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGAGAATCATGAGGGCACATAAGACTC 140439 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 || ||| | | | || || ||||||||||| | ||| || ||||| | ||| ||| || Sbjct 140438 CAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATCTGGGATCCACAAAGC-ATAGAA 140380 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || ||||| | ||| |||||| || || ||||||||| | ||| | || | | Sbjct 140379 CAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTTTTTCAAATCCAAAAATTCGAA 140320 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 ||||| | |||||| || || ||||| | || | |||| || ||||| ||||| || Sbjct 140319 TATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGCTCCTGGTCGTTTATTTCCACC 140260 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||| | ||||| || ||||| || ||||| | |||||| |||| || |||||| || Sbjct 140259 TTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAACATAGGAACAACACCATTTGA 140200 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63349 ||||| || || | |||||| | || | || | ||| | | | | ||| | | Sbjct 140199 AACTCCATTTGTTCCAGCAATATAGGTGCCTTTTGCTCTAATGCAATGC-ACATGA-ACA 140142 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || || || || || || ||||| ||| | ||||| || ||||| || ||| Sbjct 140141 CCAATACCACCAGCTGACTTTGAAATCAATGCACATTGCTTTAAAGTGTCATATATCCCC 140082 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || || || ||||| |||| || ||||||||| ||||| || | | ||| Sbjct 140081 TCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAAGACAACTGAGGTCTTGGGGTT 140022 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 | ||| ||| | || ||| ||||| ||||| |||||||||| | || |||||| Sbjct 140021 GCAGCAGCAAAGAGAGTTGGACTTGCGTGGGTAAAATATTTTTCAGATAATAAATTGTAT 139962 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 || | ||||| | || ||||| ||| ||||| | | || | ||||||||| Sbjct 139961 GTGTTGATAGCAGCATCAATATCTTCACCATGTATTCCAATAGATACTCTCATTAACATA 139902 Query 63590 TGCTGAGGTCTTTCAAC 63606 ||||| ||||| ||||| Sbjct 139901 TGCTGTGGTCTCTCAAC 139885 >seq142 Length=7807734 Score = 109 bits (120), Expect = 7e-19 Identities = 106/134 (79%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 33120 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 ||||| |||| ||| | | || |||| || | ||||||||||||||||||||||||| Sbjct 5993919 GTTAGGTTATGTCAACAAGT--TACCTTT-GACAAATCCACTTCTTCCACTGTCCAAAAT 5993863 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 33239 ||||| || || || || ||||| ||||| || ||| |||| |||||||| || || ||| Sbjct 5993862 GATGCTTCCGCTTTCTTGTACATTTTCCATATATCAGGATACTGAATTGGGAATATTACA 5993803 Query 33240 AATCTATTTGGATT 33253 |||| ||||||| Sbjct 5993802 AATCGTCTTGGATT 5993789 Score = 105 bits (116), Expect = 8e-18 Identities = 157/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || ||| ||| | ||| ||| || || ||||| ||||| || || | ||| | Sbjct 5995012 CCTCATCCCTAGAAATAAGTTCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCT 5994953 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || ||||| ||||| || |||||||| || ||||| ||||| || |||| Sbjct 5994952 TCAGCCAGAAGATGGAAGCAAAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 5994893 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 32857 | | | | || ||| | ||| |||| || ||||||| | ||||||| || Sbjct 5994892 CGACGATACGTTCACCAAATGTGGC--TGTCTTGCTGGCGATCCACTGTAGAGCCCAGTC 5994835 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||||||||||| ||||| |||| ||||| || || || || Sbjct 5994834 AGCCTTCTTTTTCACACAGGGCAGAGTCTCAATGGCGTTGAA 5994793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633570672342800