Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq557 300 2e-76 >seq557 Length=1183051 Score = 300 bits (332), Expect = 2e-76 Identities = 529/761 (70%), Gaps = 11/761 (1%) Strand=Plus/Plus Query 51682 TCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCT 51741 ||||| |||||| ||| | ||||| | ||||| | | ||| ||||| || || | Sbjct 1026214 TCCATGAAGGCGCGTACAAAGACGTCTGATGGCCCAAAGTGTCGTTTGACCAGGCTCCTT 1026273 Query 51742 TGAAATCGTAGTTCATGAGGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGA 51801 |||| |||||| |||||| ||| || | |||| | |||| || ||||| | Sbjct 1026274 TGAAGTCGTAGCTCATGAAGAATATATGGTCCATGTATTTCTGAGCTTCGTTGTAGTTCA 1026333 Query 51802 CGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGCTGGTCAACAGGTACGAACGGTTC- 51860 | ||||| |||||||| | || |||||||| ||| |||| | ||| | | | Sbjct 1026334 CCACTTGGATTTTATCCCAACCTGCGCTGATAGCGGAAGTCAGCTCGTATTT-CTTTCCA 1026392 Query 51861 GTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTC 51920 || | || ||||||| |||||| || || || || ||| || | |||||| Sbjct 1026393 GTTTCAGCTGATAACTCGTTGAGCATCTCACGGAGTTCCTTCATCAGACTTACGTACACA 1026452 Query 51921 GCACCATCGCGATCGGGATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCC 51980 |||| || | |||| ||| |||| |||||| |||||||| ||||| || || ||| Sbjct 1026453 TCACCGTCT---TTGGGACTGCCGAGGTTGGGATTAGCGCCTTTACCGCCAGGGAATTCC 1026509 Query 51981 CAGTCGACGTCGACTCCGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCG 52040 || |||| || || || || ||||| ||||| || |||||| || ||| || | Sbjct 1026510 CAATCGATATCAACACCATCAAAGAATTTCCAGGTTTCCAGAAAATCTTTAACTGAAGCT 1026569 Query 52041 ACGAA--GGTTGCGCGTTTGCTCGCGTC-GTGCAGGAAGAAGAACGGATCGGACAGCGTC 52097 || || | | | | || | | ||| ||| || |||||||| ||||| | || ||| Sbjct 1026570 ACAAACCGATCTCTC-TTAGATTT-GTCAGTGAAG-AAGAAGAATGGATCAGCCAAAGTC 1026626 Query 52098 CAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGC 52157 || || ||||| || |||| || || || ||| || || |||| | ||||| | Sbjct 1026627 CATCCACCGATAGATGGCAAGATTTTCAGGTCAGGCTTAGCTTGTTTCAACATCATCAAC 1026686 Query 52158 TGTCCAAAGTTTCCCTTGTACGGATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGC 52217 || |||||||| |||||||| || |||||||| | || | || ||||| |||||||| Sbjct 1026687 TGGCCAAAGTTGCCCTTGTATGGCTCGTTCCATGAAGACAATCCCTTCTGTGGTTTCTGG 1026746 Query 52218 AGCGCCGCCCAGGGATCGTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGT 52277 || || ||||| ||||| || || | |||||| |||||| | ||| |||||| || Sbjct 1026747 AGAGCTGCCCATGGATCATGGATGGACACCTTGAAGTCCTCTCGGCCGCTGCACGATCGC 1026806 Query 52278 TGCAACGCTTCGAAACTGTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCG 52337 ||||| |||| ||||||| ||||| |||| |||||||||||||| ||||||||| Sbjct 1026807 TGCAAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATCGCCTCCG 1026866 Query 52338 CACATGGGAATGAAGCCGTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACG 52397 || || || |||||||||||||||| ||| | | || || | ||||| | ||||| Sbjct 1026867 CAAATTGGGATGAAGCCGTACAGCAAATGGGTTAAATTGGGAATAGGCACGCGGTCTACC 1026926 Query 52398 GGAAAGTTGCGCAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 || || || | || |||||||||||||| || || || Sbjct 1026927 GGGAATTTTCTAGGATAGACGCCCCATTCGACGAAATACGC 1026967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537551166730280