Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq142 179 4e-40 seq1951 132 5e-26 seq6406 131 2e-25 >seq142 Length=7807734 Score = 179 bits (198), Expect = 4e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||||| |||||||| || |||| | || |||||||||||||| ||||| ||||| || Sbjct 5994371 ATCTCTGATGTATGTGTCAATTAGTAATGAGTACATTTCAGAATGTACATTTTCCATAGC 5994312 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||| |||| ||||| || | || || || || || || || || Sbjct 5994311 AATTTGGAACCCATAGAAAAATCTGGCTTCAGTCACTTGGACCTCCTGTGAGAACCTTTC 5994252 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| ||||||||||||||||| ||||| ||||| || || || ||||| | |||||| || Sbjct 5994251 TACAAGATTTTCATTGACTATTCCATCTGATGCAGCGAAGAATGCCAAAACATGCTTAAT 5994192 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA 93586 |||||| | ||| ||| || | |||||| || |||| ||| | |||| Sbjct 5994191 AAAATGCCTTTCACAATCCTTCAATGAATCCCAGTCAGATAAATCCTGTGAA 5994140 Score = 129 bits (142), Expect = 7e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 ||||| | ||| |||||||| || |||||||| |||||||| ||||| |||||||| | | Sbjct 5993895 TTTGACAAATCCACTTCTTCCACTGTCCAAAATGATGCTTCCGCTTTCTTGTACATTTTC 5993836 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 ||||| || |||| |||||||| ||||| ||||| || | || ||||| ||| | Sbjct 5993835 CATATATCAGGATACTGAATTGGGAATATTACAAATCGTCTTGGATTATCCCGTAGCAGT 5993776 Query 93701 GGCTCTAGTTGTGGGTCAAAC 93721 ||||| ||||||||||||||| Sbjct 5993775 GGCTCAAGTTGTGGGTCAAAC 5993755 Score = 125 bits (138), Expect = 8e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||||||||||| | || || | ||||||| ||||| ||||| || || |||||| Sbjct 5994992 TCATTGCTGAATGTAAGTCCAGGCATGAGTCCTCTCTTCTTCAGCCAGAAGATGGAAGCA 5994933 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||||| || ||||| || || ||||| || || || || || || |||||||| |||| Sbjct 5994932 AAACTGCCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGGCGACGATACGTTCACCAAAT 5994873 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | || | || ||| |||||| | || |||||| || || || || || | ||| || Sbjct 5994872 GTGGCTGTCTTGCTGGCGATCCACTGTAGAGCCCAGTCAGCCTTCTTTTTCACACAGGGC 5994813 Query 93314 AGTGTTTCGATAGCGTTAAATA 93335 || || || || ||||| |||| Sbjct 5994812 AGAGTCTCAATGGCGTTGAATA 5994791 >seq1951 Length=12115595 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 614625 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 614684 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 614685 GTGGGTTCGAACCCCACACCTGACAAA 614711 >seq6406 Length=2142222 Score = 131 bits (144), Expect = 2e-25 Identities = 81/86 (94%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1389306 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1389247 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 1389246 TGGGTTCGAACCCCACACCTGACAAA 1389221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556806902835320