Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq621 104 6e-19 seq6987 77.0 8e-11 >seq621 Length=6989410 Score = 104 bits (114), Expect = 6e-19 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 3346 GTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAA 3405 || ||||||| | | ||| ||||| || |||||||||||||||||||| || || | Sbjct 5934769 GTGTTTCCAAAAGTGACTAAGTGTACATTCCACAAATACGGTCCTTCGGGAACCGTGCAG 5934828 Query 3406 AACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTC 3465 |||| ||| ||||| || | || ||| ||| | || ||||||||||| ||| | ||| Sbjct 5934829 AACTTCGACGGACTGTGTGTGCTGCCGCTGAATATCGTAAACGAGAAGATATACGTGTTC 5934888 Query 3466 CTCTGGTTCTGGTTC 3480 || |||||||||||| Sbjct 5934889 CTGTGGTTCTGGTTC 5934903 Score = 96.9 bits (106), Expect = 9e-17 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||||||||||||||| ||||||||||||||||||||||||| | ||||||| Sbjct 5760280 ACGATGCACTCTGCATCCTCCCACTGAACGTGGTCAACGAGAAGATCTACGTGTTCCTCT 5760339 Query 3470 GGTTCTGGTTC 3480 ||||||||||| Sbjct 5760340 GGTTCTGGTTC 5760350 >seq6987 Length=5290126 Score = 77.0 bits (84), Expect = 8e-11 Identities = 84/112 (75%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 ||||| || |||||||||||| ||||||| | | | || |||| | ||||| || Sbjct 4217188 TGTACATTCCACAAATACGGTTCTTCGGGAACAATCCAGAAACACGACGCTCTCTGTGTC 4217247 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGT 3478 || || |||| | ||||||||||||| | ||| ||||| |||||||||| Sbjct 4217248 CTTGCGCTGAACATCCTCAACGAGAAGATATTCATCTTCCTTTGGTTCTGGT 4217299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12478943080500