Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq142 116 7e-21 >seq142 Length=7807734 Score = 116 bits (128), Expect = 7e-21 Identities = 162/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 42612 TTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG 42671 ||||| ||||| ||||| ||||||| | || |||||||| |||||||| || | ||| Sbjct 5994793 TTCAACGCCATTGAGACTCTGCCCTGTGTGAAAAAGAAGGCTGACTGGGCTCTACAGTGG 5994852 Query 42672 ATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGG 42730 |||| || | ||| || || || || || | | || ||||| | || || || || Sbjct 5994853 ATCGCCAG-CAAGACAGCCACATTTGGTGAACGTATCGTCGCCTTCGCTGCAGTTGAAGG 5994911 Query 42731 CATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGC 42789 ||||||||| |||||| || || |||||||||||||| ||| ||| ||| || |||| Sbjct 5994912 CATCTTCTTTTCGGGCAGTTTTGCTTCCATCTTCTGGCTGAAGAAGAGAGGACTC-ATGC 5994970 Query 42790 CCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | ||||| || ||| || ||||| || ||||| |||| Sbjct 5994971 CTGGACTTACATTCAGCAATGAACTTATTTCTAGGGATGAGG 5995012 Score = 104 bits (114), Expect = 4e-17 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| || || | ||||| || || || ||||| | ||||| || ||||| Sbjct 5995267 AGGGCCTCCACACAGACTTCGCGTGTCTGATGTTCAAG---CACCTGGTCCAGAAGCCAA 5995323 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 ||||||| ||| | | ||||||| ||| ||||||| ||||||| |||||||||| | Sbjct 5995324 GTAAGGAGCTGGTGCTGAAGATCATCAAGGACGCCGTGGTGATCGAGCAGGAGTTCCTGA 5995383 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | | || |||||||| ||| | ||||||||| ||||||||||| |||||||| Sbjct 5995384 CAGACGCGTTGCCCGTGAGGCTGCTGGGCATGAACTGCGACCTCATGTCGCAGTACATCG 5995443 Query 43009 AGTACGTCGCCGACCATCTCCTG 43031 ||| || || |||| || ||| Sbjct 5995444 AGTTTGTGGCTGACCGACTGCTG 5995466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944247799769680