Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2594 158 1e-33 >seq2594 Length=7326867 Score = 158 bits (174), Expect = 1e-33 Identities = 832/1311 (63%), Gaps = 48/1311 (4%) Strand=Plus/Minus Query 113933 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 113992 ||||| | || ||||| | ||| | |||||||| | ||||||||||| | ||||| Sbjct 141278 CGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAATGATTCATTGTTACCAAGTATTTGA 141219 Query 113993 GCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTA 114052 || ||||| || || ||||| || || || ||||| || || || || | || | Sbjct 141218 GCAGTGGAAGCAGTTGGCATAGGGGCTATTAGAAGTGAATTGCGCAGTCCATGTTTGGCA 141159 Query 114053 ATGCGTTCCTTGAGGGCGTCCCAGTCGTA-------GTTG-AGCTTTGTCTCCCCCTGCC 114104 || |||||| | | | ||| || | || | || ||||| || Sbjct 141158 ATTTTTTCCTTTAATACTTGCCAATCCCAAAGATCTGTGGGAGTTTTGTT--------CC 141107 Query 114105 ACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGC 114164 |||| ||| |||| | |||||||| | || || ||| | || || ||| | Sbjct 141106 ACATCTCATACTGTAATATACCTTGACTAACAGGACTACCTTCATAAGTTTCATATACAC 141047 Query 114165 CCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAA 114224 | | || ||||||||| | || || || | || | | ||| || || ||||| | Sbjct 141046 CATATTTTTCTGCCAATTCGCAACTGGCTTCTAAAGCACCATAATAAATAGTTTCAAATA 140987 Query 114225 TGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAAT 114283 | | ||||| | | || ||| ||| | | || | ||| ||| | |||| Sbjct 140986 TTTGTTGATTCAGTTTAATAGCACTTTCGTTTTCATAAG-GAATGCGCATCAATACAAAT 140928 Query 114284 ACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGA 114343 || || | ||| || ||||| | ||||| || | |||||||||||| || |||| Sbjct 140927 GTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATTTGA-TTTCTT 140869 Query 114344 GCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 114402 ||| ||| |||||||| || ||| |||| |||| || || | ||||||| Sbjct 140868 TGCTTCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTTCTGAGTGACAAT 140809 Query 114403 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAG---TCTCTTCATTGACATA 114459 || || | ||| | ||||| |||| |||| || | | || ||||| ||| | Sbjct 140808 TTTAGTCACTTCCTTAAGCT-----TAAT-AAAATTGTATGTTTTATCATCATTCACAAA 140755 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 | || | || || || |||| ||| ||||| | || ||||| | |||||||| Sbjct 140754 CATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAGATGTGTACTC 140695 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 | |||||| |||||||| || | |||||| |||||||| || || ||||| ||| Sbjct 140694 AACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCTGATTACTCTT 140635 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 | | ||||| |||||||| || ||||| ||||| || || || || ||| | || | Sbjct 140634 TCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTTGTGCCTCTAT 140575 Query 114640 AATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGC---TCGCCCCTCCTCCT 114695 |||||| ||||| | || | ||| || | || ||| | || |||| | Sbjct 140574 AATAGCTTTCCATAGTATTTG-AGCTTTAAC--TTGC-TTGACATAACGTTTTTCCTGTT 140519 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGC 114753 | || ||| ||||| || ||||| || |||||| || | |||| || || || | Sbjct 140518 CATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAG--TCTGCTAGTCCAGGAGA 140461 Query 114754 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTC 114813 | || ||||| | ||| ||| | || | |||||| || ||||| || | || Sbjct 140460 ATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCATAAATAAATC 140401 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 114873 ||||||||| | ||| |||| || || | | |||| || | || ||||| Sbjct 140400 TGGGATCCACAAAGCATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTGCCATGATTCTT 140341 Query 114874 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 114933 ||| |||||||| || | ||||| || ||||| || || | ||| || || | | Sbjct 140340 TTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGACAGCAAAGGC 140281 Query 114934 CCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAG 114990 || || | ||| | || | ||||| || || ||| || | || || | Sbjct 140280 TCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTGTAAACACGCAA 140221 Query 114991 CATTGGAATGATACCATCAGATTGGCCATTTGTCCC--CCGAATACGAGACTTATTGGCT 115048 ||| |||| | ||||| || |||||||| || | ||| | | || || ||| Sbjct 140220 CATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTGCCT--TTTGCT 140163 Query 115049 CTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 115108 || | ||| | || | ||||||||| || || ||||||| || || || | | Sbjct 140162 CTAATGCAATGCACATGAACACCAATACCACCAGCTGACTTTGAAATCAATGCACATTGC 140103 Query 115109 GTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTC 115168 | | | || | || ||||| || || |||| | || |||| | ||| || ||| Sbjct 140102 TTTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAAGAAAACAGGAA 140043 Query 115169 GACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 115219 |||| || || ||||| || |||| ||||| ||||| | |||||| Sbjct 140042 GACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGTGG 139992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597295783638440