Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq5445 87.8 1e-12 seq2594 87.8 1e-12 >seq5445 Length=10666 Score = 87.8 bits (96), Expect = 1e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||| ||||| ||||| |||||||||||||||||||||| ||||||||||| |||||| Sbjct 1228 TCGGAGAGGGCTGGCATAACTACCACCACGTGTTCCCCTGGGACTACAAGGCGGCCGAGC 1287 Query 108947 TGGGGAACGAC 108957 |||| ||| || Sbjct 1288 TGGGCAACTAC 1298 >seq2594 Length=7326867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506 ||||||||| || | ||||||| ||| ||||| || |||||||||| ||||| || Sbjct 1378606 ACAGAACACAATTTACAACTGGGTGCGCGACCACAGAGTCCACCACAAGTTTTCTGAAAC 1378547 Query 108507 GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCAT 108566 | || || |||||| | || | | || |||| ||||| ||||| || |||||||| Sbjct 1378546 ATCAGCTGATCCACACGATGCTCGCCGCGGATTCTTCTTCTCACACGTCGGCTGGCTCAT 1378487 Query 108567 GATGACCAAGGACCCCGACGT 108587 ||||| || |||| ||||| Sbjct 1378486 GATGAAGAAACACCCAGACGT 1378466 Score = 87.8 bits (96), Expect = 1e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||| ||||| ||||| |||||||||||||||||||||| ||||||||||| |||||| Sbjct 1493587 TCGGAGAGGGCTGGCATAACTACCACCACGTGTTCCCCTGGGACTACAAGGCGGCCGAGC 1493646 Query 108947 TGGGGAACGAC 108957 |||| ||| || Sbjct 1493647 TGGGCAACTAC 1493657 Score = 87.8 bits (96), Expect = 1e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||| ||||| ||||| |||||||||||||||||||||| ||||||||||| |||||| Sbjct 1494468 TCGGAGAGGGCTGGCATAACTACCACCACGTGTTCCCCTGGGACTACAAGGCGGCCGAGC 1494527 Query 108947 TGGGGAACGAC 108957 |||| ||| || Sbjct 1494528 TGGGCAACTAC 1494538 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 108767 GGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCG 108826 |||| ||| ||| ||||| | |||||||| ||||| || ||||| |||| || |||| Sbjct 2404215 GGTATGCCTTCATTCTCAATGTGACGTGGCTCGTCAACTCCGCGGCCCACAAGTGGGGCG 2404156 Query 108827 ACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTC 108886 || || | ||||||| ||| || ||||| | | ||| | | || || | Sbjct 2404155 ACAAACCTTACGACAAGGCCATCAAGCCTTCCGAAAATATCTCAGTGTCCGTTTTTGCCC 2404096 Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||| || || | ||||||||||||||| ||||||| ||||||||| | ||||| Sbjct 2404095 TCGGAGAAGGCTTCCACAACTACCACCACACCTTCCCCTGGGACTACAAGACGGCCGAAC 2404036 Query 108947 TGGGGAACGAC 108957 | || ||| || Sbjct 2404035 TCGGCAACAAC 2404025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381736772935992