Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plodia_20interpunctella_20[genbank_20GCA_5F900182495.1_202017-05-06] 7,743 sequences; 382,235,502 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2594 163 3e-35 >seq2594 Length=7326867 Score = 163 bits (180), Expect = 3e-35 Identities = 624/962 (65%), Gaps = 32/962 (3%) Strand=Plus/Minus Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 ||| | |||| || || | ||| || ||||| | ||||| || | |||||||||||| Sbjct 140937 CAATACAAATGTGTCAGCTAAACCCTGCACACCAATCCCAATAGGTCTATGTCTCATATT 140878 Query 116295 AGACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 116353 || || || ||| ||| |||||||| || ||| |||| |||| || || | Sbjct 140877 TGATTTCTTTGCT-TCTGGCACTGGATAAAAGTTGACATCAATAATTTTATTCAGGTTCT 140819 Query 116354 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT---CTT 116410 ||||||| || || | ||| | |||||| ||| |||| || || | | | Sbjct 140818 GAGTGACAATTTTAGTCACTTCCTTAAGCTT-----AAT-AAAATTGTATGTTTTATCAT 140765 Query 116411 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 116470 |||| ||| || || | || || || |||| ||| ||||| | || ||||| | Sbjct 140764 CATTCACAAACATATTTAACGCAATGGATGCCAAATTGCACACTGCTGTTTCATCTGCAG 140705 Query 116471 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 |||||||| | |||||| |||||||| || | |||||| |||||||| || || | Sbjct 140704 ATGTGTACTCAACAATTTCTGTACACAAGTTGCTGCACTTAATTGTGCCCAAATTTTTCT 140645 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 |||| |||| | ||||| |||||||| || ||||||||||| || || || || || Sbjct 140644 GATTACTCTTTCTATTACAGGCATCCTTATATAGCATATATGGTGTGCCAGTTTCAACTT 140585 Query 116591 GGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGC---TCGC 116646 | | || | |||||| ||||||| || | ||| || | || ||| | || Sbjct 140584 GTGCCTCTATAATAGCTTTCCATAGTATTTG-AGCTTTAAC--TTGC-TTGACATAACGT 140529 Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC--ACAGCCTCTGAGA 116704 |||| || || ||| ||||| |||||||| || |||||| |||| |||| | Sbjct 140528 TTTTCCTGTTCATATTTTTCATAGAGTGCCTCAAATTCCTCACCCCAACAG--TCTGCTA 140471 Query 116705 GCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 | || || | | || || || | ||| ||| | || | |||||| || |||| Sbjct 140470 GTCCAGGAGAATCATGAGGGCACATAAGACTCCAGTCTTCATTTTTCTCAACGCGTTTCA 140411 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824 | || | ||||||||||| | || |||| || || | | |||| || | | Sbjct 140410 TAAATAAATCTGGGATCCACAAAGCATAGAACAGTTCTCTTGCTCTGACTTCCTCTTTGC 140351 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | ||||| ||| |||||||| || | ||||| || ||||| || || | ||| | Sbjct 140350 CATGATTCTTTTTCAAATCCAAAAATTCGAATATATCTGCATGCCAAGGCTCTAAGTAGA 140291 Query 116885 CCGCGATTGACCCCTTG-CG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 | || | | | ||| | || | ||| | || | ||||| || || || ||| Sbjct 140290 CAGC-AAAGGCTCCTGGTCGTTTATTTCCACCTTGATCAACATATCTGGCAGTGTTGTTG 140232 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC--CCGAATACGAG 116998 | || || | ||| |||| | ||||| || |||||||| || | ||| | | Sbjct 140231 TAAACACGCAACATAGGAACAACACCATTTGAAACTCCATTTGTTCCAGCAATATAGGTG 140172 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 || || ||||| | || | || | ||||||||| || || ||||||| || Sbjct 140171 CCT--TTTGCTCTAATGCAATGCACATGAACACCAATACCACCAGCTGACTTTGAAATCA 140114 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 ||| || | | | | | || | || ||||| || || |||| | || |||| | | Sbjct 140113 ATGCACATTGCTTTAAAGTGTCATATATCCCCTCAATGCTGTCATCTTTCATTGCAACAA 140054 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 | || ||| |||| || || ||||| || |||| ||||| ||||| | |||| Sbjct 140053 GAAAACAGGAAGACAACTGAGGTCTTGGGGTTGCAGCAGCAAAGAGAGTTGGACTTGCGT 139994 Query 117179 GG 117180 || Sbjct 139993 GG 139992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613447820171880